Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RK93_RS06540 | Genome accession | NZ_CP026072 |
| Coordinates | 1246412..1246915 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain FDAARGOS_35 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1227420..1250978 | 1246412..1246915 | within | 0 |
Gene organization within MGE regions
Location: 1227420..1250978
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RK93_RS06395 (RK93_006395) | - | 1227420..1227671 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| RK93_RS06400 (RK93_006400) | - | 1227971..1228234 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| RK93_RS06405 (RK93_006405) | - | 1228372..1228944 (-) | 573 | WP_000769721.1 | PepSY domain-containing protein | - |
| RK93_RS06410 (RK93_006410) | - | 1229125..1229493 (-) | 369 | WP_000849177.1 | YxeA family protein | - |
| RK93_RS06415 (RK93_006415) | selX | 1229862..1230473 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| RK93_RS15890 | - | 1230673..1231380 (+) | 708 | Protein_1206 | tyrosine-type recombinase/integrase | - |
| RK93_RS06430 (RK93_006430) | - | 1231419..1232357 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| RK93_RS15960 (RK93_006435) | - | 1232961..1233140 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| RK93_RS06440 (RK93_006440) | - | 1233156..1233668 (-) | 513 | WP_000813310.1 | hypothetical protein | - |
| RK93_RS06445 (RK93_006445) | - | 1233786..1234067 (-) | 282 | WP_001577971.1 | hypothetical protein | - |
| RK93_RS15775 | - | 1234378..1234548 (-) | 171 | WP_000022954.1 | hypothetical protein | - |
| RK93_RS06450 (RK93_006450) | - | 1234823..1235392 (-) | 570 | WP_001293077.1 | terminase small subunit | - |
| RK93_RS06455 (RK93_006455) | - | 1235389..1235730 (-) | 342 | WP_000358778.1 | hypothetical protein | - |
| RK93_RS06460 (RK93_006460) | - | 1235733..1236260 (-) | 528 | WP_000771370.1 | spore coat protein | - |
| RK93_RS06465 (RK93_006465) | - | 1236311..1236529 (-) | 219 | WP_000448770.1 | capsid morphogenesis B protein | - |
| RK93_RS06470 (RK93_006470) | - | 1236547..1237125 (-) | 579 | WP_000846280.1 | hypothetical protein | - |
| RK93_RS06475 (RK93_006475) | - | 1237137..1237478 (-) | 342 | WP_001190606.1 | hypothetical protein | - |
| RK93_RS06480 (RK93_006480) | - | 1237928..1238569 (-) | 642 | WP_001019274.1 | hypothetical protein | - |
| RK93_RS06485 (RK93_006485) | - | 1238571..1238915 (-) | 345 | WP_000567971.1 | hypothetical protein | - |
| RK93_RS06490 (RK93_006490) | - | 1239186..1241438 (-) | 2253 | WP_000974924.1 | phage/plasmid primase, P4 family | - |
| RK93_RS06495 (RK93_006495) | - | 1241509..1241823 (-) | 315 | WP_001103949.1 | DUF1474 family protein | - |
| RK93_RS06500 (RK93_006500) | - | 1241826..1242035 (-) | 210 | WP_001058494.1 | hypothetical protein | - |
| RK93_RS06505 (RK93_006505) | - | 1242028..1242174 (-) | 147 | WP_000784873.1 | hypothetical protein | - |
| RK93_RS06510 (RK93_006510) | - | 1242186..1242458 (-) | 273 | WP_001138303.1 | helix-turn-helix domain-containing protein | - |
| RK93_RS06515 (RK93_006515) | - | 1242459..1242671 (-) | 213 | WP_001063623.1 | helix-turn-helix transcriptional regulator | - |
| RK93_RS06520 (RK93_006520) | - | 1242821..1243555 (+) | 735 | WP_000142630.1 | helix-turn-helix transcriptional regulator | - |
| RK93_RS06525 (RK93_006525) | - | 1243854..1245068 (+) | 1215 | WP_000270128.1 | site-specific integrase | - |
| RK93_RS06530 (RK93_006530) | - | 1245092..1245889 (+) | 798 | WP_000119675.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| RK93_RS06535 (RK93_006535) | rpsR | 1246118..1246360 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| RK93_RS06540 (RK93_006540) | ssbA | 1246412..1246915 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| RK93_RS06545 (RK93_006545) | rpsF | 1246936..1247232 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| RK93_RS06555 (RK93_006555) | - | 1247476..1247667 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| RK93_RS06560 (RK93_006560) | ychF | 1247753..1248850 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| RK93_RS06565 (RK93_006565) | - | 1248862..1249065 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| RK93_RS06570 (RK93_006570) | - | 1249095..1249976 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| RK93_RS06575 (RK93_006575) | - | 1250133..1250978 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=266595 RK93_RS06540 WP_000934799.1 1246412..1246915(-) (ssbA) [Staphylococcus aureus strain FDAARGOS_35]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=266595 RK93_RS06540 WP_000934799.1 1246412..1246915(-) (ssbA) [Staphylococcus aureus strain FDAARGOS_35]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |