Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RK88_RS09695 | Genome accession | NZ_CP026071 |
| Coordinates | 1855448..1855951 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain FDAARGOS_30 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1835780..1860011 | 1855448..1855951 | within | 0 |
Gene organization within MGE regions
Location: 1835780..1860011
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RK88_RS09545 (RK88_009545) | - | 1835780..1836034 (-) | 255 | WP_000466746.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| RK88_RS09550 (RK88_009550) | - | 1836328..1836591 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| RK88_RS09555 (RK88_009555) | - | 1836729..1837301 (-) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| RK88_RS09560 (RK88_009560) | - | 1837482..1837850 (-) | 369 | WP_000849155.1 | YxeA family protein | - |
| RK88_RS09565 (RK88_009565) | - | 1838143..1838801 (+) | 659 | Protein_1782 | site-specific integrase | - |
| RK88_RS09570 (RK88_009570) | - | 1838807..1839814 (+) | 1008 | WP_001080636.1 | Abi family protein | - |
| RK88_RS15040 (RK88_009575) | - | 1840578..1840757 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| RK88_RS09580 (RK88_009580) | - | 1840773..1841285 (-) | 513 | WP_000813311.1 | hypothetical protein | - |
| RK88_RS09585 (RK88_009585) | - | 1841403..1841804 (-) | 402 | WP_000683457.1 | hypothetical protein | - |
| RK88_RS09590 (RK88_009590) | - | 1841982..1842950 (-) | 969 | WP_000801980.1 | Abi family protein | - |
| RK88_RS15045 (RK88_009595) | - | 1843097..1843180 (-) | 84 | Protein_1788 | terminase small subunit | - |
| RK88_RS09600 (RK88_009600) | - | 1843227..1843796 (-) | 570 | WP_001293071.1 | terminase small subunit | - |
| RK88_RS09605 (RK88_009605) | - | 1843793..1844005 (-) | 213 | WP_078104036.1 | pathogenicity island family protein | - |
| RK88_RS09610 (RK88_009610) | - | 1844137..1844664 (-) | 528 | WP_000771361.1 | spore coat protein | - |
| RK88_RS09615 (RK88_009615) | - | 1844717..1845370 (-) | 654 | WP_000214170.1 | hypothetical protein | - |
| RK88_RS09620 (RK88_009620) | - | 1845401..1845745 (-) | 345 | WP_001288442.1 | hypothetical protein | - |
| RK88_RS09625 (RK88_009625) | - | 1846453..1847094 (-) | 642 | WP_001019762.1 | hypothetical protein | - |
| RK88_RS09630 (RK88_009630) | - | 1847091..1847471 (-) | 381 | WP_000356942.1 | hypothetical protein | - |
| RK88_RS09635 (RK88_009635) | - | 1847781..1849490 (-) | 1710 | WP_000447468.1 | DUF927 domain-containing protein | - |
| RK88_RS09640 (RK88_009640) | - | 1849504..1850373 (-) | 870 | WP_001002709.1 | primase alpha helix C-terminal domain-containing protein | - |
| RK88_RS09645 (RK88_009645) | - | 1850438..1850764 (-) | 327 | WP_001103967.1 | DUF1474 family protein | - |
| RK88_RS09650 (RK88_009650) | - | 1850765..1851148 (-) | 384 | WP_000403837.1 | hypothetical protein | - |
| RK88_RS09655 (RK88_009655) | - | 1851150..1851353 (-) | 204 | WP_001231376.1 | hypothetical protein | - |
| RK88_RS09660 (RK88_009660) | - | 1851320..1851493 (-) | 174 | WP_000784892.1 | hypothetical protein | - |
| RK88_RS09665 (RK88_009665) | - | 1851505..1851777 (-) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| RK88_RS09670 (RK88_009670) | - | 1851778..1851942 (-) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| RK88_RS09675 (RK88_009675) | - | 1852091..1852714 (+) | 624 | WP_000230361.1 | helix-turn-helix transcriptional regulator | - |
| RK88_RS09680 (RK88_009680) | - | 1852875..1854090 (+) | 1216 | Protein_1805 | tyrosine-type recombinase/integrase | - |
| RK88_RS09685 (RK88_009685) | - | 1854203..1854922 (+) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| RK88_RS09690 (RK88_009690) | rpsR | 1855154..1855396 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| RK88_RS09695 (RK88_009695) | ssbA | 1855448..1855951 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| RK88_RS09700 (RK88_009700) | rpsF | 1855972..1856268 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| RK88_RS09710 (RK88_009710) | - | 1856512..1856703 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| RK88_RS09715 (RK88_009715) | ychF | 1856789..1857886 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| RK88_RS09720 (RK88_009720) | - | 1857898..1858101 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| RK88_RS09725 (RK88_009725) | - | 1858131..1859012 (-) | 882 | WP_000373076.1 | mechanosensitive ion channel family protein | - |
| RK88_RS09730 (RK88_009730) | - | 1859166..1860011 (-) | 846 | WP_001573568.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=266576 RK88_RS09695 WP_000934799.1 1855448..1855951(-) (ssbA) [Staphylococcus aureus strain FDAARGOS_30]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=266576 RK88_RS09695 WP_000934799.1 1855448..1855951(-) (ssbA) [Staphylococcus aureus strain FDAARGOS_30]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |