Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AXA56_RS10580 Genome accession   NZ_CP031609
Coordinates   2136550..2137065 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain N3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2131550..2142065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXA56_RS10535 (AXA56_10535) csrA 2132365..2132550 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AXA56_RS10565 (AXA56_10565) yqaB 2133780..2134346 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AXA56_RS10570 (AXA56_10570) yqaA 2134343..2134771 (+) 429 WP_001287454.1 YqaA family protein -
  AXA56_RS10575 (AXA56_10575) gshA 2134844..2136400 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AXA56_RS10580 (AXA56_10580) luxS 2136550..2137065 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AXA56_RS10585 (AXA56_10585) - 2137116..2138228 (-) 1113 WP_042004031.1 ATP-binding protein -
  AXA56_RS10590 (AXA56_10590) - 2138225..2138932 (-) 708 WP_032222539.1 RNA ligase family protein -
  AXA56_RS10595 (AXA56_10595) emrB 2139190..2140728 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AXA56_RS10600 (AXA56_10600) emrA 2140745..2141917 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=266461 AXA56_RS10580 WP_001130211.1 2136550..2137065(+) (luxS) [Escherichia coli strain N3]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=266461 AXA56_RS10580 WP_001130211.1 2136550..2137065(+) (luxS) [Escherichia coli strain N3]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment