Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RK83_RS04750 | Genome accession | NZ_CP026069 |
| Coordinates | 947028..947531 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain FDAARGOS_25 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 942871..991337 | 947028..947531 | within | 0 |
Gene organization within MGE regions
Location: 942871..991337
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RK83_RS04715 (RK83_004715) | - | 942968..943813 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| RK83_RS04720 (RK83_004720) | - | 943967..944848 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| RK83_RS04725 (RK83_004725) | - | 944878..945081 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| RK83_RS04730 (RK83_004730) | ychF | 945093..946190 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| RK83_RS04735 (RK83_004735) | - | 946276..946467 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| RK83_RS04745 (RK83_004745) | rpsF | 946711..947007 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| RK83_RS04750 (RK83_004750) | ssbA | 947028..947531 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| RK83_RS04755 (RK83_004755) | rpsR | 947583..947825 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| RK83_RS04760 (RK83_004760) | - | 948102..949040 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| RK83_RS04765 (RK83_004765) | - | 949079..949792 (-) | 714 | Protein_902 | tyrosine-type recombinase/integrase | - |
| RK83_RS04770 (RK83_004770) | selX | 949998..950609 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| RK83_RS04775 (RK83_004775) | - | 950978..951346 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| RK83_RS04780 (RK83_004780) | - | 951527..952099 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| RK83_RS04785 (RK83_004785) | - | 952236..952499 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| RK83_RS04790 (RK83_004790) | - | 952799..953050 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| RK83_RS04795 (RK83_004795) | - | 953089..953298 (-) | 210 | WP_000211677.1 | hypothetical protein | - |
| RK83_RS04800 (RK83_004800) | - | 953476..954057 (+) | 582 | WP_000158375.1 | histidine phosphatase family protein | - |
| RK83_RS04805 (RK83_004805) | - | 954123..954506 (-) | 384 | WP_000868259.1 | hypothetical protein | - |
| RK83_RS04810 (RK83_004810) | - | 954776..955402 (-) | 627 | WP_000746679.1 | NDxxF motif lipoprotein | - |
| RK83_RS04815 (RK83_004815) | - | 955475..955693 (-) | 219 | Protein_912 | hypothetical protein | - |
| RK83_RS04820 (RK83_004820) | ahpF | 955846..957369 (-) | 1524 | WP_000930514.1 | alkyl hydroperoxide reductase subunit F | - |
| RK83_RS04825 (RK83_004825) | ahpC | 957385..957954 (-) | 570 | WP_000052781.1 | alkyl hydroperoxide reductase subunit C | - |
| RK83_RS04830 (RK83_004830) | nfsA | 958446..959201 (+) | 756 | WP_001287099.1 | oxygen-insensitive NADPH nitroreductase | - |
| RK83_RS04835 (RK83_004835) | - | 959281..960669 (-) | 1389 | WP_000991018.1 | L-cystine transporter | - |
| RK83_RS04840 (RK83_004840) | - | 960754..960852 (+) | 99 | WP_001792089.1 | hypothetical protein | - |
| RK83_RS04850 (RK83_004850) | - | 961516..962835 (+) | 1320 | WP_001557163.1 | ISL3-like element IS1181 family transposase | - |
| RK83_RS15210 | - | 962838..962915 (+) | 78 | Protein_919 | hypothetical protein | - |
| RK83_RS04855 (RK83_004855) | - | 963167..964123 (-) | 957 | WP_000956137.1 | hypothetical protein | - |
| RK83_RS04860 (RK83_004860) | - | 964241..964903 (-) | 663 | WP_000394690.1 | hypothetical protein | - |
| RK83_RS04865 (RK83_004865) | - | 965046..965453 (-) | 408 | WP_000763767.1 | general stress protein | - |
| RK83_RS04870 (RK83_004870) | xpt | 965966..966544 (+) | 579 | WP_000421410.1 | xanthine phosphoribosyltransferase | - |
| RK83_RS04875 (RK83_004875) | pbuX | 966544..967812 (+) | 1269 | WP_000793018.1 | xanthine permease PbuX | - |
| RK83_RS04880 (RK83_004880) | guaB | 967850..969316 (+) | 1467 | WP_000264071.1 | IMP dehydrogenase | - |
| RK83_RS04885 (RK83_004885) | guaA | 969341..970882 (+) | 1542 | WP_000424963.1 | glutamine-hydrolyzing GMP synthase | - |
| RK83_RS04890 (RK83_004890) | - | 970950..972143 (-) | 1194 | WP_000237797.1 | site-specific integrase | - |
| RK83_RS04895 (RK83_004895) | - | 972170..972370 (-) | 201 | WP_000633907.1 | DUF3173 family protein | - |
| RK83_RS04905 (RK83_004905) | - | 972868..973098 (-) | 231 | WP_000845143.1 | helix-turn-helix domain-containing protein | - |
| RK83_RS04910 (RK83_004910) | - | 973095..973517 (-) | 423 | WP_000804879.1 | sigma-70 family RNA polymerase sigma factor | - |
| RK83_RS04920 (RK83_004920) | - | 974048..974401 (+) | 354 | WP_001227350.1 | helix-turn-helix domain-containing protein | - |
| RK83_RS04925 (RK83_004925) | - | 974459..974625 (-) | 167 | Protein_932 | cysteine-rich KTR domain-containing protein | - |
| RK83_RS04930 (RK83_004930) | tet(M) | 974744..976663 (-) | 1920 | WP_000691737.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| RK83_RS04935 (RK83_004935) | - | 976679..976795 (-) | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| RK83_RS04945 (RK83_004945) | - | 977040..977969 (-) | 930 | WP_000584387.1 | conjugal transfer protein | - |
| RK83_RS04950 (RK83_004950) | - | 977986..979008 (-) | 1023 | WP_000768373.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| RK83_RS04955 (RK83_004955) | - | 979005..981032 (-) | 2028 | WP_000192393.1 | membrane protein | - |
| RK83_RS04960 (RK83_004960) | - | 981029..983482 (-) | 2454 | WP_000331165.1 | ATP-binding protein | - |
| RK83_RS04965 (RK83_004965) | - | 983466..983861 (-) | 396 | WP_000723887.1 | conjugal transfer protein | - |
| RK83_RS04970 (RK83_004970) | - | 983933..984571 (-) | 639 | WP_000248477.1 | DUF6037 family protein | - |
| RK83_RS04975 (RK83_004975) | - | 984627..985127 (-) | 501 | WP_000425404.1 | antirestriction protein ArdA | - |
| RK83_RS04980 (RK83_004980) | - | 985188..985967 (-) | 780 | WP_000675717.1 | abortive infection family protein | - |
| RK83_RS04985 (RK83_004985) | - | 986009..986230 (-) | 222 | WP_001009054.1 | hypothetical protein | - |
| RK83_RS04990 (RK83_004990) | - | 986227..986517 (-) | 291 | WP_000055376.1 | hypothetical protein | - |
| RK83_RS04995 (RK83_004995) | mobT | 986514..987698 (-) | 1185 | WP_000426689.1 | MobT family relaxase | - |
| RK83_RS05000 (RK83_005000) | - | 987880..989283 (-) | 1404 | WP_001130244.1 | FtsK/SpoIIIE domain-containing protein | - |
| RK83_RS05005 (RK83_005005) | - | 989305..990078 (-) | 774 | WP_000185761.1 | hypothetical protein | - |
| RK83_RS05010 (RK83_005010) | - | 990088..990465 (-) | 378 | WP_001234191.1 | YdcP family protein | - |
| RK83_RS05015 (RK83_005015) | - | 990486..990800 (-) | 315 | WP_000421279.1 | YdcP family protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=266461 RK83_RS04750 WP_000934799.1 947028..947531(+) (ssbA) [Staphylococcus aureus strain FDAARGOS_25]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=266461 RK83_RS04750 WP_000934799.1 947028..947531(+) (ssbA) [Staphylococcus aureus strain FDAARGOS_25]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |