Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DY328_RS10460 Genome accession   NZ_CP031556
Coordinates   1968181..1968861 (-) Length   226 a.a.
NCBI ID   WP_000274754.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain Sag27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1963181..1973861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DY328_RS10430 (DY328_10430) - 1963403..1964074 (-) 672 WP_000061344.1 GTP pyrophosphokinase family protein -
  DY328_RS10435 (DY328_10435) - 1964184..1964756 (+) 573 WP_000149079.1 CYTH domain-containing protein -
  DY328_RS10440 (DY328_10440) - 1964933..1965907 (+) 975 WP_000840699.1 ribose-phosphate diphosphokinase -
  DY328_RS10445 (DY328_10445) - 1965911..1967026 (+) 1116 WP_000639600.1 cysteine desulfurase family protein -
  DY328_RS10450 (DY328_10450) - 1967028..1967375 (+) 348 WP_000863499.1 DUF1831 domain-containing protein -
  DY328_RS10455 (DY328_10455) - 1967530..1968168 (+) 639 WP_000605174.1 redox-sensing transcriptional repressor Rex -
  DY328_RS10460 (DY328_10460) radC 1968181..1968861 (-) 681 WP_000274754.1 DNA repair protein RadC Machinery gene
  DY328_RS10465 (DY328_10465) - 1968957..1970090 (-) 1134 WP_000667246.1 AI-2E family transporter -
  DY328_RS10470 (DY328_10470) - 1970181..1971622 (-) 1442 Protein_1935 6-phospho-beta-glucosidase -
  DY328_RS10475 (DY328_10475) - 1971782..1972396 (-) 615 WP_000895130.1 SGNH/GDSL hydrolase family protein -
  DY328_RS10480 (DY328_10480) - 1972497..1973318 (-) 822 WP_000593347.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25901.18 Da        Isoelectric Point: 8.8891

>NTDB_id=266410 DY328_RS10460 WP_000274754.1 1968181..1968861(-) (radC) [Streptococcus agalactiae strain Sag27]
MYHIELKKEALLPRERLVDLGADRLSNQELLAILLRTGIKEKPVLEISTQILENISSLADFGQLSLQELQSIKGIGQVKS
VEIKAMLELAKRIHKAEYDRKEQILSSEQLARKMMLELGDKKQEHLVAIYMDTQNRIIEQRTIFIGTVRRSVAEPREILH
YAYKNMATSLIIIHNHPSGSPKPSESDLSFTKKIKRSCDHLGIVCLDHIIVGKNKYYSFREEADIL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=266410 DY328_RS10460 WP_000274754.1 1968181..1968861(-) (radC) [Streptococcus agalactiae strain Sag27]
ATGTACCATATTGAATTAAAAAAGGAAGCTTTACTACCAAGAGAACGCCTAGTTGATTTAGGCGCAGATAGATTGAGTAA
TCAGGAGTTATTAGCCATTCTCTTACGTACAGGTATTAAAGAAAAACCTGTTCTGGAAATTTCAACACAAATTTTAGAAA
ACATAAGCAGTTTAGCAGATTTTGGTCAATTATCCTTACAGGAGTTGCAATCCATTAAAGGAATCGGTCAGGTTAAATCC
GTCGAAATAAAAGCTATGCTAGAACTAGCAAAACGGATTCACAAAGCTGAATATGATCGTAAAGAGCAAATTTTAAGTAG
TGAACAATTAGCGAGGAAAATGATGCTCGAATTAGGGGATAAAAAACAAGAACATTTAGTAGCTATTTATATGGATACAC
AAAATCGTATTATCGAACAGAGAACTATTTTTATTGGTACTGTACGTCGTTCAGTAGCAGAGCCAAGAGAAATTCTACAT
TATGCTTATAAAAACATGGCAACCTCTTTGATTATCATACATAATCATCCCTCAGGTTCTCCAAAGCCCAGTGAAAGTGA
TTTAAGTTTCACTAAAAAAATAAAACGATCATGTGATCATCTGGGAATTGTTTGCCTAGATCACATCATCGTTGGAAAAA
ATAAATATTATAGTTTTCGAGAAGAAGCAGATATTTTATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(12-80)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

59.292

100

0.593
  radC Streptococcus pneumoniae R6

58.85

100

0.589
  radC Streptococcus pneumoniae D39

58.85

100

0.589
  radC Streptococcus gordonii str. Challis substr. CH1

58.85

100

0.589
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

42.654

93.363

0.398

Multiple sequence alignment