Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DV947_RS06795 Genome accession   NZ_CP031545
Coordinates   1283511..1284197 (-) Length   228 a.a.
NCBI ID   WP_116920320.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1278511..1289197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV947_RS06765 (DV947_06770) - 1278592..1279167 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  DV947_RS06770 (DV947_06775) - 1279531..1280502 (+) 972 WP_116920316.1 ribose-phosphate diphosphokinase -
  DV947_RS06775 (DV947_06780) - 1280506..1281618 (+) 1113 WP_002948029.1 cysteine desulfurase family protein -
  DV947_RS06780 (DV947_06785) - 1281620..1281967 (+) 348 WP_116920317.1 DUF1831 domain-containing protein -
  DV947_RS06785 (DV947_06790) - 1282111..1282770 (+) 660 WP_116920318.1 redox-sensing transcriptional repressor Rex -
  DV947_RS06790 (DV947_06795) - 1282763..1283458 (+) 696 WP_116920319.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DV947_RS06795 (DV947_06800) radC 1283511..1284197 (-) 687 WP_116920320.1 DNA repair protein RadC Machinery gene
  DV947_RS06800 (DV947_06805) - 1284245..1286029 (-) 1785 WP_014727631.1 rhamnan synthesis F family protein -
  DV947_RS06805 (DV947_06810) - 1286026..1287081 (-) 1056 WP_002948022.1 glycosyltransferase -
  DV947_RS06810 (DV947_06815) - 1287101..1288306 (-) 1206 WP_014727633.1 ABC transporter ATP-binding protein -
  DV947_RS06815 (DV947_06820) - 1288306..1289115 (-) 810 WP_002948020.1 ABC transporter permease -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25861.95 Da        Isoelectric Point: 7.8381

>NTDB_id=266190 DV947_RS06795 WP_116920320.1 1283511..1284197(-) (radC) [Streptococcus thermophilus strain ST109]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTRSESVLSMANRILKGMTSLADLSRLSLNELQKIPGIGRVKS
IELKAMVELAKRIEKAELARSEQRMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILH
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=266190 DV947_RS06795 WP_116920320.1 1283511..1284197(-) (radC) [Streptococcus thermophilus strain ST109]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAGCGTCTCTTACAAAAGGGTGCAGAGGTCTTGTCTGA
CCAGGAACTGTTGGCGATAGTGCTGCGAACGGGGACTAGATCTGAGTCGGTCCTATCCATGGCCAACCGTATTTTAAAAG
GAATGACGAGTTTGGCGGATTTGTCTCGATTGTCCTTGAATGAGCTTCAAAAAATTCCTGGTATTGGGCGTGTGAAATCC
ATTGAGCTGAAGGCTATGGTGGAGTTGGCTAAGAGGATTGAGAAGGCTGAGTTGGCTCGTTCCGAGCAGAGAATGTCCAG
TCAGCAGGTGGCTCGTCGTATGATGTTAGATATTGGTGACAAGCCTCAGGAGCATCTGGTGGCCATCTACCTTGATACGC
AGAACCGTATTATTCAGCAAAAGACGGTCTTTATTGGTGGGGTTCGCCGTTCGATTGCCGAGCCGCGTGAGATTTTGCAT
TATGCTTGTCATCTGATGGCAACTTCCTTGATTGTGGTCCACAATCATCCTTCGGGGGAAGCCTATCCTAGTCGCAATGA
TATTGATTTTACTCAAAAGATTAAGAGGTCCTGTGACGACTTGGGAATTTGTCTTCTTGACCATCTTATTGTTGGAAAAT
CAACTTATTATTCCTTTCGTGAGGAGAGGGAGGATTTTGAACTTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.929

98.246

0.579
  radC Streptococcus pneumoniae R6

58.482

98.246

0.575
  radC Streptococcus pneumoniae D39

58.482

98.246

0.575
  radC Streptococcus gordonii str. Challis substr. CH1

57.207

97.368

0.557
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.17

92.982

0.439