Detailed information NTG0266178

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MC60_RS15705
• Genome accession: NZ_CP026055
• Coordinates: 3442781..3443656 (-)
• Length: 291 a.a.
• NCBI ID: WP_042864858.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain FDAARGOS_72
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3437781..3448656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MC60_RS15680 (MC60_015680)	-	3439528..3440712 (+)	1185	WP_103255171.1	tetratricopeptide repeat protein	-
MC60_RS15685 (MC60_015685)	mutT	3440721..3441125 (+)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
MC60_RS15690 (MC60_015690)	yacG	3441183..3441377 (-)	195	WP_010675826.1	DNA gyrase inhibitor YacG	-
MC60_RS15695 (MC60_015695)	zapD	3441388..3442110 (-)	723	WP_010675825.1	cell division protein ZapD	-
MC60_RS15700 (MC60_015700)	coaE	3442148..3442762 (-)	615	WP_042864857.1	dephospho-CoA kinase	-
MC60_RS15705 (MC60_015705)	pilD	3442781..3443656 (-)	876	WP_042864858.1	prepilin peptidase	Machinery gene
MC60_RS15710 (MC60_015710)	pilC	3443734..3444975 (-)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
MC60_RS15715 (MC60_015715)	pilB	3445103..3446809 (-)	1707	WP_042864859.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
MC60_RS15720 (MC60_015720)	tapA	3446813..3447307 (-)	495	WP_041213996.1	type IVa pilus major pilin TapA	-
MC60_RS15725 (MC60_015725)	nadC	3447618..3448481 (-)	864	WP_042864860.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32067.18 Da
• Isoelectric Point: 6.5955

>NTDB_id=266178 MC60_RS15705 WP_042864858.1 3442781..3443656(-) (pilD) [Aeromonas caviae strain FDAARGOS_72]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMEQAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADAVIGTMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=266178 MC60_RS15705 WP_042864858.1 3442781..3443656(-) (pilD) [Aeromonas caviae strain FDAARGOS_72]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGTCTGCCCATCATGATGGAGCAGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGAGGGCGCTGCCGCAACTGCCACGCTCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCACTGCTGTCGGTCTCGGTGGCAGCCGCGCTTGCCCCTGGCTGGG
GCACCCTTGCTGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCTTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGCGGTGAT
CGGTACCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAAGAGGGGATGGGGT
ACGGGGATTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCAGGCGCTATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.839	98.282	0.598
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	52.688	95.876	0.505
pilD	Acinetobacter nosocomialis M2	52.688	95.876	0.505
pilD	Neisseria gonorrhoeae MS11	50.958	89.691	0.457