Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DXX82_RS07435 Genome accession   NZ_CP031477
Coordinates   1520048..1520713 (-) Length   221 a.a.
NCBI ID   WP_115912318.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1515048..1525713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS07415 - 1517783..1518502 (+) 720 WP_005698371.1 DUF554 domain-containing protein -
  DXX82_RS07420 mutM 1518523..1519338 (-) 816 WP_065243007.1 DNA-formamidopyrimidine glycosylase -
  DXX82_RS07425 rpmG 1519411..1519581 (-) 171 WP_005613503.1 50S ribosomal protein L33 -
  DXX82_RS07430 rpmB 1519593..1519829 (-) 237 WP_005599762.1 50S ribosomal protein L28 -
  DXX82_RS07435 radC 1520048..1520713 (-) 666 WP_115912318.1 DNA repair protein RadC Machinery gene
  DXX82_RS07440 coaBC 1520916..1522118 (+) 1203 WP_115912321.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DXX82_RS07445 dut 1522192..1522647 (+) 456 WP_115912323.1 dUTP diphosphatase -
  DXX82_RS07450 slmA 1522651..1523304 (+) 654 WP_005698358.1 nucleoid occlusion factor SlmA -
  DXX82_RS07455 - 1523326..1523544 (+) 219 WP_115912944.1 YheU family protein -
  DXX82_RS07460 crp 1523561..1524229 (+) 669 WP_005698403.1 cAMP-activated global transcriptional regulator CRP Regulator

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25234.45 Da        Isoelectric Point: 6.8774

>NTDB_id=265970 DXX82_RS07435 WP_115912318.1 1520048..1520713(-) (radC) [Haemophilus parainfluenzae strain M27794]
MQTNTPLMPREKLLKYGVEALEDHELLAIFLRTGIKGCPVMELSHSVLQHFGSLRALLSADKEAFCKVKGLGITQFIQLQ
ATTEMTKRYLKQELLIEHVFSDTSTVKLYLQAELHHEEREIFMVLFLDNQHRLIKKERLFLGTINVTNVYPREIIKESLS
CNAAALILAHNHPSGLAEPSYSDKMITQKIIEAAELMDIRILDHFIVGKSTCYSFAEHNLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=265970 DXX82_RS07435 WP_115912318.1 1520048..1520713(-) (radC) [Haemophilus parainfluenzae strain M27794]
ATGCAAACAAACACCCCTTTAATGCCTCGTGAAAAACTGTTGAAATATGGCGTTGAAGCCCTAGAAGATCACGAATTACT
CGCTATTTTCTTACGTACAGGGATTAAAGGCTGCCCTGTCATGGAATTATCACATAGCGTGCTGCAACATTTTGGCTCCC
TTCGAGCCTTATTAAGTGCAGATAAAGAAGCCTTTTGTAAAGTAAAAGGATTAGGCATTACGCAGTTTATTCAACTGCAA
GCCACCACAGAAATGACAAAGCGTTATCTGAAACAAGAATTGCTGATAGAGCACGTATTTAGCGACACATCCACGGTAAA
ACTTTATCTTCAAGCAGAACTTCACCACGAAGAACGTGAAATTTTTATGGTGTTATTTTTAGATAATCAACATCGTTTGA
TAAAAAAAGAGCGGTTATTTTTAGGCACAATTAATGTGACGAATGTTTATCCACGAGAAATTATTAAAGAAAGCCTTTCC
TGTAATGCGGCCGCTTTAATTTTGGCTCACAACCACCCTTCTGGTCTGGCTGAACCGAGCTATTCCGACAAAATGATTAC
ACAAAAAATTATTGAGGCTGCTGAGTTAATGGATATTCGCATTTTAGATCATTTTATTGTCGGCAAAAGTACTTGTTATT
CTTTTGCAGAACATAATCTGCTATAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-74)

RadC-like JAB domain (RadC)

(101-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

76.471

100

0.765
  radC Streptococcus pneumoniae TIGR4

39.151

95.928

0.376
  radC Streptococcus pneumoniae R6

38.679

95.928

0.371
  radC Streptococcus pneumoniae D39

38.679

95.928

0.371