Detailed information NTG0265971

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RK51_RS05655
• Genome accession: NZ_CP026041
• Coordinates: 1086939..1087928 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain FDAARGOS_51
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1081939..1092928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RK51_RS05620 (RK51_005620)	ftsB	1081947..1082228 (+)	282	WP_005455577.1	cell division protein FtsB	-
RK51_RS05625 (RK51_005625)	ispD	1082230..1082934 (+)	705	WP_005493934.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
RK51_RS05630 (RK51_005630)	ispF	1082952..1083428 (+)	477	WP_005493937.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RK51_RS05635 (RK51_005635)	truD	1083475..1084518 (+)	1044	WP_005493940.1	tRNA pseudouridine(13) synthase TruD	-
RK51_RS05640 (RK51_005640)	surE	1084518..1085294 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
RK51_RS05645 (RK51_005645)	-	1085294..1085920 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
RK51_RS05650 (RK51_005650)	-	1085935..1086858 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
RK51_RS05655 (RK51_005655)	rpoS	1086939..1087928 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
RK51_RS05660 (RK51_005660)	mutS	1088008..1090569 (-)	2562	WP_005493944.1	DNA mismatch repair protein MutS	-
RK51_RS05665 (RK51_005665)	pncC	1090654..1091136 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
RK51_RS05670 (RK51_005670)	recA	1091337..1092380 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=265971 RK51_RS05655 WP_005478537.1 1086939..1087928(+) (rpoS) [Vibrio parahaemolyticus strain FDAARGOS_51]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=265971 RK51_RS05655 WP_005478537.1 1086939..1087928(+) (rpoS) [Vibrio parahaemolyticus strain FDAARGOS_51]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGTAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACACTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851