Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DXX82_RS03735 Genome accession   NZ_CP031477
Coordinates   775574..776422 (-) Length   282 a.a.
NCBI ID   WP_115911568.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 770574..781422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS03705 nfuA 771360..771944 (-) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  DXX82_RS03710 - 772060..772749 (-) 690 WP_005697373.1 ComF family protein -
  DXX82_RS03715 comE 772769..774151 (-) 1383 WP_115911560.1 type IV pilus secretin PilQ Machinery gene
  DXX82_RS03720 - 774153..774536 (-) 384 WP_115911562.1 pilus assembly protein PilP -
  DXX82_RS03725 comC 774536..775078 (-) 543 WP_115911564.1 competence protein ComC Machinery gene
  DXX82_RS03730 comB 775075..775587 (-) 513 WP_115911566.1 competence protein ComB Machinery gene
  DXX82_RS03735 comA 775574..776422 (-) 849 WP_115911568.1 pilus assembly protein PilM Machinery gene
  DXX82_RS03740 - 776522..779134 (+) 2613 WP_111304846.1 penicillin-binding protein 1A -
  DXX82_RS03745 - 779259..780563 (-) 1305 WP_205411139.1 MFS transporter -
  DXX82_RS03750 thiE 780560..781237 (-) 678 WP_065242938.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 32712.69 Da        Isoelectric Point: 7.0640

>NTDB_id=265947 DXX82_RS03735 WP_115911568.1 775574..776422(-) (comA) [Haemophilus parainfluenzae strain M27794]
MEIAHRKQRKQQIGVSKQQDNLYFVWLDAFHKVQSICLNGQQKDIFSHLLPHLPQKTNQCCFIGAISPHLTWSKTLILPQ
TLNVQECEQQCRFILQKELPIPLDELWFDYLTTPLKQGFRLDITAIRQQSAKAELVKYSPLKLTVLDLLNHSILRAFYVI
LGQEPINTLFLYQDQQGCLAVCERLQQRQVLQSQHDLSELYQQFIQRFSETIEQVYVYQTPDILNSRTIESLPQNWQRIE
TDLPVIALGNALWQTDLKLVDLSSKTPALLSSVNRESGDVKP

Nucleotide


Download         Length: 849 bp        

>NTDB_id=265947 DXX82_RS03735 WP_115911568.1 775574..776422(-) (comA) [Haemophilus parainfluenzae strain M27794]
ATGGAAATTGCCCATAGAAAGCAGCGAAAACAACAAATTGGTGTGAGTAAACAACAAGATAACCTCTATTTCGTTTGGCT
AGATGCATTCCACAAAGTTCAATCTATTTGCTTAAATGGACAGCAAAAAGACATTTTTTCCCATTTATTACCTCATTTAC
CACAAAAAACGAACCAATGTTGTTTTATCGGCGCCATTTCACCCCATTTAACTTGGTCTAAAACGCTTATTTTACCGCAA
ACTCTCAATGTCCAGGAATGTGAACAACAATGTCGTTTCATTTTGCAAAAAGAATTACCGATTCCGTTGGATGAATTATG
GTTTGATTATCTTACCACACCACTAAAACAAGGTTTTCGTTTGGATATCACGGCGATTCGACAACAAAGTGCAAAGGCAG
AATTAGTAAAATATTCACCGCTAAAATTGACCGTACTTGATTTACTGAATCACAGTATTTTACGCGCATTTTATGTCATT
TTAGGGCAAGAGCCGATTAACACTTTATTTTTATATCAAGATCAACAAGGTTGTCTCGCCGTTTGTGAACGCTTACAACA
ACGACAAGTTTTGCAATCTCAACATGATTTATCTGAACTTTATCAACAGTTTATCCAACGCTTTTCCGAAACGATAGAAC
AGGTTTATGTGTATCAAACGCCAGATATATTGAATTCACGCACGATAGAATCACTGCCTCAGAATTGGCAACGCATCGAA
ACAGATTTACCTGTCATCGCTTTAGGTAATGCACTGTGGCAAACCGATTTAAAGCTAGTGGATTTATCCTCAAAAACACC
TGCACTTTTGTCTTCAGTTAATCGGGAGAGTGGTGATGTTAAGCCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

49.81

93.262

0.465
  comA Haemophilus influenzae Rd KW20

49.049

93.262

0.457

Multiple sequence alignment