Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C2I05_RS18970 Genome accession   NZ_CP026039
Coordinates   3577387..3577665 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain PK1_2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3572387..3582665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS18950 (C2I05_18925) - 3573575..3574486 (+) 912 WP_120028049.1 ketopantoate reductase family protein -
  C2I05_RS18955 (C2I05_18930) ampS 3574520..3575752 (-) 1233 WP_003232341.1 aminopeptidase -
  C2I05_RS18960 (C2I05_18935) ykpC 3575861..3575995 (-) 135 WP_003238865.1 protein YkpC -
  C2I05_RS18965 (C2I05_18940) mreBH 3576096..3577103 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  C2I05_RS18970 (C2I05_18945) abrB 3577387..3577665 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  C2I05_RS18975 (C2I05_18950) kinC 3577855..3579141 (+) 1287 WP_120028050.1 two-component sensor histidine kinase KinC -
  C2I05_RS18980 (C2I05_18955) ykqA 3579157..3579984 (+) 828 WP_120028051.1 gamma-glutamylcyclotransferase -
  C2I05_RS18985 (C2I05_18960) ktrC 3580047..3580712 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  C2I05_RS18990 (C2I05_18965) ade 3580868..3582601 (+) 1734 WP_120028052.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=265890 C2I05_RS18970 WP_003244728.1 3577387..3577665(+) (abrB) [Bacillus subtilis strain PK1_2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=265890 C2I05_RS18970 WP_003244728.1 3577387..3577665(+) (abrB) [Bacillus subtilis strain PK1_2]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment