Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LACR_RS12105 | Genome accession | NC_008527 |
| Coordinates | 2335075..2335575 (-) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris subsp. cremoris SK11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2330075..2340575
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LACR_RS12080 (LACR_2497) | gnd | 2331200..2332105 (-) | 906 | WP_011677237.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LACR_RS12085 (LACR_2498) | - | 2332474..2333322 (+) | 849 | WP_011677238.1 | MurR/RpiR family transcriptional regulator | - |
| LACR_RS12090 (LACR_2499) | - | 2333361..2333669 (+) | 309 | WP_011677239.1 | DUF960 domain-containing protein | - |
| LACR_RS12095 (LACR_2500) | - | 2333742..2334527 (-) | 786 | WP_041167492.1 | metallophosphoesterase | - |
| LACR_RS12100 (LACR_2501) | rpsR | 2334658..2334903 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LACR_RS12105 (LACR_2502) | ssb | 2335075..2335575 (-) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| LACR_RS12110 (LACR_2503) | rpsF | 2335605..2335898 (-) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| LACR_RS12115 (LACR_2504) | - | 2336092..2336946 (-) | 855 | WP_011677243.1 | undecaprenyl-diphosphate phosphatase | - |
| LACR_RS12120 (LACR_2505) | - | 2337468..2338934 (+) | 1467 | WP_011677244.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=26588 LACR_RS12105 WP_011677241.1 2335075..2335575(-) (ssb) [Lactococcus cremoris subsp. cremoris SK11]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=26588 LACR_RS12105 WP_011677241.1 2335075..2335575(-) (ssb) [Lactococcus cremoris subsp. cremoris SK11]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |