Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C2I05_RS10860 Genome accession   NZ_CP026039
Coordinates   2034812..2035330 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain PK1_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2029812..2040330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS10830 (C2I05_10805) yyaJ 2030315..2031670 (+) 1356 WP_249847845.1 MFS transporter -
  C2I05_RS10835 (C2I05_10810) maa 2031704..2032258 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  C2I05_RS10840 (C2I05_10815) yyaH 2032276..2032656 (-) 381 WP_032724962.1 VOC family protein -
  C2I05_RS10845 (C2I05_10820) ccpB 2032712..2033647 (-) 936 WP_120027686.1 transcriptional regulator CcpB -
  C2I05_RS10850 (C2I05_10825) xth 2033707..2034465 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  C2I05_RS10855 (C2I05_10830) rpsR 2034529..2034768 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  C2I05_RS10860 (C2I05_10835) ssbA 2034812..2035330 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  C2I05_RS10865 (C2I05_10840) rpsF 2035371..2035658 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  C2I05_RS10870 (C2I05_10845) ychF 2035769..2036869 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  C2I05_RS10875 (C2I05_10850) yyaE 2036996..2038999 (-) 2004 WP_032724957.1 molybdopterin-dependent oxidoreductase -
  C2I05_RS10880 (C2I05_10855) yyzM 2039050..2039256 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=265857 C2I05_RS10860 WP_003219228.1 2034812..2035330(-) (ssbA) [Bacillus subtilis strain PK1_2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=265857 C2I05_RS10860 WP_003219228.1 2034812..2035330(-) (ssbA) [Bacillus subtilis strain PK1_2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AATTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment