Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C2H97_RS08850 Genome accession   NZ_CP026038
Coordinates   1684081..1684599 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1679081..1689599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS08820 (C2H97_08835) yyaJ 1679583..1680938 (+) 1356 WP_249847845.1 MFS transporter -
  C2H97_RS08825 (C2H97_08840) maa 1680972..1681526 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  C2H97_RS08830 (C2H97_08845) yyaH 1681544..1681924 (-) 381 WP_032724962.1 VOC family protein -
  C2H97_RS08835 (C2H97_08850) ccpB 1681980..1682915 (-) 936 WP_120027686.1 transcriptional regulator CcpB -
  C2H97_RS08840 (C2H97_08855) xth 1682975..1683733 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  C2H97_RS08845 (C2H97_08860) rpsR 1683798..1684037 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  C2H97_RS08850 (C2H97_08865) ssbA 1684081..1684599 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  C2H97_RS08855 (C2H97_08870) rpsF 1684640..1684927 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  C2H97_RS08860 (C2H97_08875) ychF 1685038..1686138 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  C2H97_RS08865 (C2H97_08880) yyaE 1686265..1688268 (-) 2004 WP_032724957.1 molybdopterin-dependent oxidoreductase -
  C2H97_RS08870 (C2H97_08885) yyzM 1688319..1688525 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=265776 C2H97_RS08850 WP_003219228.1 1684081..1684599(-) (ssbA) [Bacillus subtilis PY79 strain PK1_3]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=265776 C2H97_RS08850 WP_003219228.1 1684081..1684599(-) (ssbA) [Bacillus subtilis PY79 strain PK1_3]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AATTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment