Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C2H93_RS18855 Genome accession   NZ_CP026036
Coordinates   3689994..3690512 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain PK5_16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3684994..3695512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS18825 (C2H93_18830) yyaJ 3685496..3686851 (+) 1356 WP_120027685.1 MFS transporter -
  C2H93_RS18830 (C2H93_18835) maa 3686885..3687439 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  C2H93_RS18835 (C2H93_18840) yyaH 3687457..3687838 (-) 382 Protein_3707 VOC family protein -
  C2H93_RS18840 (C2H93_18845) ccpB 3687894..3688829 (-) 936 WP_249852458.1 transcriptional regulator CcpB -
  C2H93_RS18845 (C2H93_18850) xth 3688888..3689646 (-) 759 WP_249852459.1 exodeoxyribonuclease III -
  C2H93_RS18850 (C2H93_18855) rpsR 3689711..3689950 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  C2H93_RS18855 (C2H93_18860) ssbA 3689994..3690512 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  C2H93_RS18860 (C2H93_18865) rpsF 3690553..3690840 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  C2H93_RS18865 (C2H93_18870) ychF 3690951..3692051 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  C2H93_RS18870 (C2H93_18875) yyaE 3692178..3694181 (-) 2004 WP_032724957.1 molybdopterin-dependent oxidoreductase -
  C2H93_RS18875 (C2H93_18880) yyzM 3694232..3694438 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=265653 C2H93_RS18855 WP_003219228.1 3689994..3690512(-) (ssbA) [Bacillus subtilis strain PK5_16]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=265653 C2H93_RS18855 WP_003219228.1 3689994..3690512(-) (ssbA) [Bacillus subtilis strain PK5_16]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment