Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DK878_RS03880 Genome accession   NZ_CP031379
Coordinates   760781..761584 (+) Length   267 a.a.
NCBI ID   WP_009910233.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2660     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 755781..766584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK878_RS03855 (DK878_03990) - 756210..756908 (-) 699 WP_013730248.1 amino acid ABC transporter permease -
  DK878_RS03860 (DK878_03995) - 756923..757762 (-) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  DK878_RS03865 (DK878_04000) - 757773..758534 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  DK878_RS03870 (DK878_04005) yycF 758728..759432 (+) 705 WP_004298854.1 response regulator YycF -
  DK878_RS03875 (DK878_04010) micB 759425..760774 (+) 1350 WP_009910235.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DK878_RS03880 (DK878_04015) vicX 760781..761584 (+) 804 WP_009910233.1 MBL fold metallo-hydrolase Regulator
  DK878_RS03885 (DK878_04025) - 762321..763523 (-) 1203 Protein_721 IS110 family transposase -
  DK878_RS03890 (DK878_04030) - 763762..764217 (+) 456 WP_002935846.1 ATP-binding cassette domain-containing protein -
  DK878_RS03895 (DK878_04035) pbp2b 764309..766384 (+) 2076 WP_053866163.1 penicillin-binding protein PBP2B -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29645.73 Da        Isoelectric Point: 5.7755

>NTDB_id=265541 DK878_RS03880 WP_009910233.1 760781..761584(+) (vicX) [Streptococcus suis strain ISU2660]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKVTSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=265541 DK878_RS03880 WP_009910233.1 760781..761584(+) (vicX) [Streptococcus suis strain ISU2660]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATTTTAGTGGATGCTGGCTTATCAGGGAAAAAGGTTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGTGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
GCTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768

Multiple sequence alignment