Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C2H94_RS10245 Genome accession   NZ_CP026034
Coordinates   1934440..1934958 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain PK5_52     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1929440..1939958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS10215 (C2H94_10165) yyaJ 1929942..1931297 (+) 1356 WP_038828056.1 MFS transporter -
  C2H94_RS10220 (C2H94_10170) maa 1931331..1931885 (-) 555 WP_015250785.1 sugar O-acetyltransferase -
  C2H94_RS10225 (C2H94_10175) yyaH 1931903..1932283 (-) 381 WP_003244460.1 VOC family protein -
  C2H94_RS10230 (C2H94_10180) ccpB 1932339..1933274 (-) 936 WP_038828058.1 transcriptional regulator CcpB -
  C2H94_RS10235 (C2H94_10185) xth 1933334..1934092 (-) 759 WP_167568402.1 exodeoxyribonuclease III -
  C2H94_RS10240 (C2H94_10190) rpsR 1934157..1934396 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  C2H94_RS10245 (C2H94_10195) ssbA 1934440..1934958 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  C2H94_RS10250 (C2H94_10200) rpsF 1934999..1935286 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  C2H94_RS10255 (C2H94_10205) ychF 1935397..1936497 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  C2H94_RS10260 (C2H94_10210) yyaE 1936624..1938627 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  C2H94_RS10265 (C2H94_10215) yyzM 1938678..1938884 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=265465 C2H94_RS10245 WP_003219228.1 1934440..1934958(-) (ssbA) [Bacillus subtilis strain PK5_52]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=265465 C2H94_RS10245 WP_003219228.1 1934440..1934958(-) (ssbA) [Bacillus subtilis strain PK5_52]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment