Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C2H91_RS13145 Genome accession   NZ_CP026030
Coordinates   2653558..2654280 (+) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK3_9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2648558..2659280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS13120 (C2H91_13140) degS 2648869..2650026 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C2H91_RS13125 (C2H91_13145) degU 2650109..2650798 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H91_RS13130 (C2H91_13150) fakBA 2650896..2651741 (+) 846 WP_003244125.1 DegV family protein -
  C2H91_RS13135 (C2H91_13155) comFA 2651847..2653238 (+) 1392 WP_072173458.1 ATP-dependent helicase ComFA Machinery gene
  C2H91_RS13140 (C2H91_13160) comFB 2653298..2653594 (+) 297 WP_003227989.1 late competence protein ComFB -
  C2H91_RS13145 (C2H91_13165) comFC 2653558..2654280 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  C2H91_RS13150 (C2H91_13170) yvyF 2654353..2654772 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H91_RS13155 (C2H91_13175) flgM 2654853..2655119 (+) 267 WP_161986330.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H91_RS13160 (C2H91_13180) flgN 2655135..2655617 (+) 483 WP_003227999.1 flagellar protein FlgN -
  C2H91_RS13165 (C2H91_13185) flgK 2655636..2657159 (+) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  C2H91_RS13170 (C2H91_13190) flgL 2657170..2658066 (+) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  C2H91_RS13175 (C2H91_13195) yviE 2658113..2658688 (+) 576 WP_014481045.1 DUF6470 family protein -
  C2H91_RS13180 (C2H91_13200) fliW 2658709..2659140 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=265285 C2H91_RS13145 WP_014481051.1 2653558..2654280(+) (comFC) [Bacillus subtilis strain PK3_9]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=265285 C2H91_RS13145 WP_014481051.1 2653558..2654280(+) (comFC) [Bacillus subtilis strain PK3_9]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment