Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C2H91_RS13125 Genome accession   NZ_CP026030
Coordinates   2650109..2650798 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain PK3_9     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2645109..2655798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS13105 (C2H91_13125) tagO 2645684..2646760 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  C2H91_RS13110 (C2H91_13130) tagV 2646833..2647999 (-) 1167 WP_220396509.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  C2H91_RS13115 (C2H91_13135) yvyE 2647999..2648652 (-) 654 WP_003227979.1 YigZ family protein -
  C2H91_RS13120 (C2H91_13140) degS 2648869..2650026 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C2H91_RS13125 (C2H91_13145) degU 2650109..2650798 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H91_RS13130 (C2H91_13150) fakBA 2650896..2651741 (+) 846 WP_003244125.1 DegV family protein -
  C2H91_RS13135 (C2H91_13155) comFA 2651847..2653238 (+) 1392 WP_072173458.1 ATP-dependent helicase ComFA Machinery gene
  C2H91_RS13140 (C2H91_13160) comFB 2653298..2653594 (+) 297 WP_003227989.1 late competence protein ComFB -
  C2H91_RS13145 (C2H91_13165) comFC 2653558..2654280 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  C2H91_RS13150 (C2H91_13170) yvyF 2654353..2654772 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H91_RS13155 (C2H91_13175) flgM 2654853..2655119 (+) 267 WP_161986330.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H91_RS13160 (C2H91_13180) flgN 2655135..2655617 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=265283 C2H91_RS13125 WP_003219701.1 2650109..2650798(+) (degU) [Bacillus subtilis strain PK3_9]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=265283 C2H91_RS13125 WP_003219701.1 2650109..2650798(+) (degU) [Bacillus subtilis strain PK3_9]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment