Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C2H91_RS13135 Genome accession   NZ_CP026030
Coordinates   2651847..2653238 (+) Length   463 a.a.
NCBI ID   WP_072173458.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK3_9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2646847..2658238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS13115 (C2H91_13135) yvyE 2647999..2648652 (-) 654 WP_003227979.1 YigZ family protein -
  C2H91_RS13120 (C2H91_13140) degS 2648869..2650026 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C2H91_RS13125 (C2H91_13145) degU 2650109..2650798 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H91_RS13130 (C2H91_13150) fakBA 2650896..2651741 (+) 846 WP_003244125.1 DegV family protein -
  C2H91_RS13135 (C2H91_13155) comFA 2651847..2653238 (+) 1392 WP_072173458.1 ATP-dependent helicase ComFA Machinery gene
  C2H91_RS13140 (C2H91_13160) comFB 2653298..2653594 (+) 297 WP_003227989.1 late competence protein ComFB -
  C2H91_RS13145 (C2H91_13165) comFC 2653558..2654280 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  C2H91_RS13150 (C2H91_13170) yvyF 2654353..2654772 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H91_RS13155 (C2H91_13175) flgM 2654853..2655119 (+) 267 WP_161986330.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H91_RS13160 (C2H91_13180) flgN 2655135..2655617 (+) 483 WP_003227999.1 flagellar protein FlgN -
  C2H91_RS13165 (C2H91_13185) flgK 2655636..2657159 (+) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  C2H91_RS13170 (C2H91_13190) flgL 2657170..2658066 (+) 897 WP_014481046.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52542.60 Da        Isoelectric Point: 9.9687

>NTDB_id=265284 C2H91_RS13135 WP_072173458.1 2651847..2653238(+) (comFA) [Bacillus subtilis strain PK3_9]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=265284 C2H91_RS13135 WP_072173458.1 2651847..2653238(+) (comFA) [Bacillus subtilis strain PK3_9]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.488

100

0.985

Multiple sequence alignment