Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C2H91_RS10290 Genome accession   NZ_CP026030
Coordinates   2083430..2083948 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain PK3_9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2078430..2088948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS10270 (C2H91_10275) yyzM 2079504..2079710 (+) 207 WP_003226838.1 DUF951 family protein -
  C2H91_RS10275 (C2H91_10280) yyaE 2079761..2081764 (+) 2004 WP_124047754.1 molybdopterin-dependent oxidoreductase -
  C2H91_RS10280 (C2H91_10285) ychF 2081891..2082991 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  C2H91_RS10285 (C2H91_10290) rpsF 2083102..2083389 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  C2H91_RS10290 (C2H91_10295) ssbA 2083430..2083948 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  C2H91_RS10295 (C2H91_10300) rpsR 2083992..2084231 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  C2H91_RS10300 (C2H91_10305) xth 2084296..2085054 (+) 759 WP_103803393.1 exodeoxyribonuclease III -
  C2H91_RS10305 (C2H91_10310) ccpB 2085113..2086048 (+) 936 WP_249850712.1 transcriptional regulator CcpB -
  C2H91_RS10310 (C2H91_10315) yyaH 2086104..2086484 (+) 381 WP_003244460.1 VOC family protein -
  C2H91_RS10315 (C2H91_10320) maa 2086500..2087054 (+) 555 WP_032722825.1 sugar O-acetyltransferase -
  C2H91_RS10320 (C2H91_10325) yyaJ 2087088..2088443 (-) 1356 WP_049140536.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=265274 C2H91_RS10290 WP_003219228.1 2083430..2083948(+) (ssbA) [Bacillus subtilis strain PK3_9]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=265274 C2H91_RS10290 WP_003219228.1 2083430..2083948(+) (ssbA) [Bacillus subtilis strain PK3_9]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment