Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BS11774_RS05640 Genome accession   NZ_CP026010
Coordinates   1076390..1076908 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain ATCC 11774     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1071390..1081908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS05610 (BS11774_05575) yyaJ 1071964..1073247 (+) 1284 WP_128473472.1 MFS transporter -
  BS11774_RS05615 (BS11774_05580) maa 1073281..1073835 (-) 555 WP_128473473.1 sugar O-acetyltransferase -
  BS11774_RS05620 (BS11774_05585) yyaH 1073853..1074233 (-) 381 WP_029726089.1 VOC family protein -
  BS11774_RS05625 (BS11774_05590) ccpB 1074289..1075224 (-) 936 WP_029726088.1 transcriptional regulator CcpB -
  BS11774_RS05630 (BS11774_05595) xth 1075284..1076042 (-) 759 WP_029726087.1 exodeoxyribonuclease III -
  BS11774_RS05635 (BS11774_05600) rpsR 1076107..1076346 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  BS11774_RS05640 (BS11774_05605) ssbA 1076390..1076908 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  BS11774_RS05645 (BS11774_05610) rpsF 1076949..1077236 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  BS11774_RS05650 (BS11774_05615) ychF 1077347..1078447 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  BS11774_RS05655 (BS11774_05620) yyaE 1078574..1080577 (-) 2004 WP_029726086.1 molybdopterin-dependent oxidoreductase -
  BS11774_RS05660 (BS11774_05625) yyzM 1080628..1080834 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=264962 BS11774_RS05640 WP_003219228.1 1076390..1076908(-) (ssbA) [Bacillus subtilis strain ATCC 11774]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=264962 BS11774_RS05640 WP_003219228.1 1076390..1076908(-) (ssbA) [Bacillus subtilis strain ATCC 11774]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGAGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment