Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PEPE_RS00040 | Genome accession | NC_008525 |
| Coordinates | 9377..9904 (+) | Length | 175 a.a. |
| NCBI ID | WP_011672766.1 | Uniprot ID | A0A833TK56 |
| Organism | Pediococcus pentosaceus ATCC 25745 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4377..14904
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PEPE_RS00030 (PEPE_0006) | gyrA | 6330..8810 (+) | 2481 | WP_269668170.1 | DNA gyrase subunit A | - |
| PEPE_RS00035 (PEPE_0007) | rpsF | 9057..9341 (+) | 285 | WP_002833865.1 | 30S ribosomal protein S6 | - |
| PEPE_RS00040 (PEPE_0008) | ssb | 9377..9904 (+) | 528 | WP_011672766.1 | single-stranded DNA-binding protein | Machinery gene |
| PEPE_RS00045 (PEPE_0009) | rpsR | 9928..10164 (+) | 237 | WP_002833867.1 | 30S ribosomal protein S18 | - |
| PEPE_RS00050 (PEPE_0010) | - | 10367..12367 (+) | 2001 | WP_002833868.1 | DHH family phosphoesterase | - |
| PEPE_RS00055 (PEPE_0011) | rplI | 12373..12825 (+) | 453 | WP_011672767.1 | 50S ribosomal protein L9 | - |
| PEPE_RS00060 (PEPE_0012) | dnaB | 12874..14271 (+) | 1398 | WP_002833870.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19174.71 Da Isoelectric Point: 4.7512
>NTDB_id=26493 PEPE_RS00040 WP_011672766.1 9377..9904(+) (ssb) [Pediococcus pentosaceus ATCC 25745]
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NSGQSIDISDDDLPF
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NSGQSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=26493 PEPE_RS00040 WP_011672766.1 9377..9904(+) (ssb) [Pediococcus pentosaceus ATCC 25745]
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATAGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATAGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
67.582 |
100 |
0.703 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.286 |
100 |
0.623 |
| ssb | Glaesserella parasuis strain SC1401 |
33.871 |
100 |
0.36 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |