Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   CYK57_RS00295 Genome accession   NZ_CP026009
Coordinates   64375..65058 (+) Length   227 a.a.
NCBI ID   WP_099821798.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain App6     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 59375..70058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK57_RS00265 (CYK57_00051) - 60335..61351 (-) 1017 WP_067206279.1 lambda-exonuclease family protein -
  CYK57_RS00270 (CYK57_00052) - 61412..61555 (-) 144 WP_162837524.1 hypothetical protein -
  CYK57_RS00275 (CYK57_00053) bet 61637..62455 (-) 819 WP_099821799.1 phage recombination protein Bet -
  CYK57_RS00280 ssb 62535..62954 (-) 420 WP_008844793.1 single-stranded DNA-binding protein -
  CYK57_RS00285 - 62970..63296 (-) 327 WP_000455722.1 hypothetical protein -
  CYK57_RS00290 (CYK57_00054) - 63664..64266 (+) 603 WP_000035786.1 hypothetical protein -
  CYK57_RS00295 (CYK57_00055) ideA 64375..65058 (+) 684 WP_099821798.1 endonuclease Regulator
  CYK57_RS00300 (CYK57_00056) - 65177..66991 (+) 1815 WP_152118327.1 DUF4365 domain-containing protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26347.47 Da        Isoelectric Point: 7.5667

>NTDB_id=264920 CYK57_RS00295 WP_099821798.1 64375..65058(+) (ideA) [Actinobacillus pleuropneumoniae strain App6]
MNRTNLLVNFLIALFAIPAFAEHPTSFSQAKRFAREVYQDTQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGKRLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPLDEWEKVRDLKIKGIQGNSNCHVSDSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=264920 CYK57_RS00295 WP_099821798.1 64375..65058(+) (ideA) [Actinobacillus pleuropneumoniae strain App6]
ATGAATAGAACTAATTTACTCGTTAACTTCTTAATAGCGTTGTTCGCTATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCCCGAGAAGTTTACCAAGACACCCAGAGTACGTTTTACTGTGGATGTAGTTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAAAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGGTGGTCGTCGGAACTGTGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTGTCGGATCTCCATAACCTTGTACCATCAGTAGGAGAACTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAATGAACCAAGAGCCTACGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGCCGTGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGTGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAACTATTTGAAGCTTGGTCAAGAATGGACCCTTTGGACGAATGGGAAAAAGTACGTGATTTGAAGATTAAAG
GCATTCAAGGTAATTCTAATTGCCATGTATCAGATAGCTGTTAA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(43-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

94.273

100

0.943
  dns Aliivibrio fischeri ES114

51.739

100

0.524
  dns Vibrio parahaemolyticus RIMD 2210633

51.316

100

0.515
  dns Vibrio cholerae strain A1552

50.667

99.119

0.502
  dns Campylobacter jejuni RM1221

39.07

94.714

0.37

Multiple sequence alignment