Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SPYM_RS03775 Genome accession   NC_009332
Coordinates   720203..721165 (+) Length   320 a.a.
NCBI ID   WP_011888797.1    Uniprot ID   -
Organism   Streptococcus pyogenes str. Manfredo     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 715203..726165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM_RS03755 (SpyM50716) - 715912..717132 (-) 1221 WP_010922430.1 DUF3114 domain-containing protein -
  SPYM_RS03760 (SpyM50717) queA 717139..718167 (-) 1029 WP_011284937.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SPYM_RS03765 (SpyM50718) nagB 718369..719118 (+) 750 WP_011888796.1 glucosamine-6-phosphate deaminase -
  SPYM_RS03770 (SpyM50719) - 719192..719908 (+) 717 WP_002995774.1 pseudouridine synthase -
  SPYM_RS03775 (SpyM50721) coiA 720203..721165 (+) 963 WP_011888797.1 competence protein CoiA Machinery gene
  SPYM_RS03780 (SpyM50722) pepF 721178..722983 (+) 1806 WP_011888798.1 oligoendopeptidase F Regulator
  SPYM_RS03785 (SpyM50723) - 723359..724555 (+) 1197 WP_011888799.1 L-lactate MFS transporter -
  SPYM_RS03790 (SpyM50724) - 724621..725328 (+) 708 WP_011888800.1 O-methyltransferase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37889.36 Da        Isoelectric Point: 10.2944

>NTDB_id=26480 SPYM_RS03775 WP_011888797.1 720203..721165(+) (coiA) [Streptococcus pyogenes str. Manfredo]
MTKILTALDGRNQLISLVTQPISTKPPFRCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQFSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=26480 SPYM_RS03775 WP_011888797.1 720203..721165(+) (coiA) [Streptococcus pyogenes str. Manfredo]
GTGACAAAAATATTAACCGCTTTAGATGGTAGGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTCGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACTAGTTTAGTC
AGAACAGAAGCTGTTTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCGGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGGTTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATTTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(20-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

43.226

96.875

0.419
  coiA Lactococcus lactis subsp. cremoris KW2

39.394

100

0.406
  coiA Streptococcus pneumoniae Rx1

41.935

96.875

0.406
  coiA Streptococcus pneumoniae D39

41.935

96.875

0.406
  coiA Streptococcus pneumoniae R6

41.935

96.875

0.406
  coiA Streptococcus pneumoniae TIGR4

41.935

96.875

0.406

Multiple sequence alignment