Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   C0W57_RS20165 Genome accession   NZ_CP025939
Coordinates   3947713..3947832 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain 10075     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 3942713..3952832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0W57_RS20150 (C0W57_20150) - 3944325..3945008 (+) 684 WP_014416901.1 response regulator transcription factor -
  C0W57_RS20155 (C0W57_20155) - 3944995..3946428 (+) 1434 WP_103042081.1 sensor histidine kinase -
  C0W57_RS20160 (C0W57_20160) rapC 3946581..3947729 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  C0W57_RS20165 (C0W57_20165) phrC 3947713..3947832 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  C0W57_RS20170 (C0W57_20170) - 3947980..3948090 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  C0W57_RS20175 (C0W57_20175) - 3948170..3949534 (-) 1365 WP_015239155.1 aspartate kinase -
  C0W57_RS20180 (C0W57_20180) ceuB 3949948..3950901 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  C0W57_RS20185 (C0W57_20185) - 3950891..3951838 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  C0W57_RS20190 (C0W57_20190) - 3951832..3952590 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=264664 C0W57_RS20165 WP_003156334.1 3947713..3947832(+) (phrC) [Bacillus velezensis strain 10075]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=264664 C0W57_RS20165 WP_003156334.1 3947713..3947832(+) (phrC) [Bacillus velezensis strain 10075]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718

Multiple sequence alignment