Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CXW72_RS07480 Genome accession   NZ_CP025913
Coordinates   1555016..1555552 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 203740     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1550016..1560552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW72_RS07460 aphA 1550305..1551018 (+) 714 WP_001395166.1 acid phosphatase AphA -
  CXW72_RS07465 yjbQ 1551129..1551545 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CXW72_RS07470 yjbR 1551549..1551905 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  CXW72_RS07475 uvrA 1551940..1554762 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  CXW72_RS07480 ssb 1555016..1555552 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CXW72_RS07485 yjcB 1555651..1555932 (-) 282 WP_001295689.1 YjcB family protein -
  CXW72_RS07490 pdeC 1556362..1557948 (+) 1587 Protein_1439 c-di-GMP phosphodiesterase PdeC -
  CXW72_RS07495 soxS 1557951..1558274 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  CXW72_RS07500 soxR 1558360..1558824 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=264439 CXW72_RS07480 WP_000168305.1 1555016..1555552(+) (ssb) [Escherichia coli strain 203740]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=264439 CXW72_RS07480 WP_000168305.1 1555016..1555552(+) (ssb) [Escherichia coli strain 203740]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment