Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CXW77_RS03680 Genome accession   NZ_CP025910
Coordinates   745408..745944 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 204446     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 740408..750944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW77_RS03660 soxR 742136..742600 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  CXW77_RS03665 soxS 742686..743009 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  CXW77_RS03670 pdeC 743012..744598 (-) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  CXW77_RS03675 yjcB 745028..745309 (+) 282 WP_001295689.1 YjcB family protein -
  CXW77_RS03680 ssb 745408..745944 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CXW77_RS03685 uvrA 746198..749020 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  CXW77_RS03690 yjbR 749055..749411 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  CXW77_RS03695 yjbQ 749415..749831 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CXW77_RS03700 aphA 749942..750655 (-) 714 WP_001355871.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=264404 CXW77_RS03680 WP_000168305.1 745408..745944(-) (ssb) [Escherichia coli strain 204446]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=264404 CXW77_RS03680 WP_000168305.1 745408..745944(-) (ssb) [Escherichia coli strain 204446]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment