Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CXX10_RS24665 Genome accession   NZ_CP025862
Coordinates   4994342..4994878 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 504237     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4989342..4999878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX10_RS24645 aphA 4989631..4990344 (+) 714 WP_001355871.1 acid phosphatase AphA -
  CXX10_RS24650 yjbQ 4990455..4990871 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CXX10_RS24655 yjbR 4990875..4991231 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  CXX10_RS24660 uvrA 4991266..4994088 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  CXX10_RS24665 ssb 4994342..4994878 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CXX10_RS24670 yjcB 4994977..4995258 (-) 282 WP_001295689.1 YjcB family protein -
  CXX10_RS24675 pdeC 4995688..4997274 (+) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  CXX10_RS24680 soxS 4997277..4997600 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  CXX10_RS24685 soxR 4997686..4998150 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=264294 CXX10_RS24665 WP_000168305.1 4994342..4994878(+) (ssb) [Escherichia coli strain 504237]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=264294 CXX10_RS24665 WP_000168305.1 4994342..4994878(+) (ssb) [Escherichia coli strain 504237]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment