Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1J03_RS12955 Genome accession   NZ_CP025804
Coordinates   2648337..2648873 (+) Length   178 a.a.
NCBI ID   WP_114886978.1    Uniprot ID   A0A345QNG1
Organism   Sulfitobacter sp. SK012     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2643337..2653873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1J03_RS12940 (C1J03_12925) - 2644647..2646737 (+) 2091 WP_114886975.1 ABC transporter ATP-binding protein -
  C1J03_RS12945 (C1J03_12930) - 2646837..2647256 (-) 420 WP_114886976.1 hypothetical protein -
  C1J03_RS12950 (C1J03_12935) - 2647516..2648112 (-) 597 WP_254694037.1 lytic transglycosylase domain-containing protein -
  C1J03_RS12955 (C1J03_12940) ssb 2648337..2648873 (+) 537 WP_114886978.1 single-stranded DNA-binding protein Machinery gene
  C1J03_RS12960 (C1J03_12945) - 2648764..2649309 (+) 546 WP_114886979.1 GNAT family N-acetyltransferase -
  C1J03_RS12965 (C1J03_12950) aroB 2649310..2650413 (-) 1104 WP_114886980.1 3-dehydroquinate synthase -
  C1J03_RS12970 (C1J03_12955) - 2650406..2651002 (-) 597 WP_114886981.1 shikimate kinase -
  C1J03_RS25550 - 2651084..2651233 (+) 150 WP_174234465.1 hypothetical protein -
  C1J03_RS12975 (C1J03_12960) - 2651238..2652836 (+) 1599 WP_114886982.1 hypothetical protein -
  C1J03_RS12980 (C1J03_12965) - 2652833..2653801 (+) 969 WP_114886983.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18441.01 Da        Isoelectric Point: 5.0178

>NTDB_id=263964 C1J03_RS12955 WP_114886978.1 2648337..2648873(+) (ssb) [Sulfitobacter sp. SK012]
MAGSVNKVIIIGNLGRDPEVRSFQNGGKVCNLRIATSENWKDKNTGERREKTEWHSVAIFQEGLVRIAEQYLKKGSKVYI
EGQLQTRKWQDQSGTDKYSTEIVLQGFNGTLTMLDGRDGGGGGGGGGGGGGGYDDRGAGGGGYDQGYDSGPSSSGGGGGQ
GGGGQGGGSRDLDDEIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=263964 C1J03_RS12955 WP_114886978.1 2648337..2648873(+) (ssb) [Sulfitobacter sp. SK012]
ATGGCCGGCTCAGTGAACAAAGTGATCATTATCGGCAACTTGGGACGTGATCCCGAGGTGCGCAGTTTCCAAAATGGCGG
CAAGGTGTGCAATCTGCGCATCGCAACGTCGGAAAACTGGAAAGACAAAAATACCGGTGAGCGGCGCGAAAAGACCGAAT
GGCATTCGGTGGCAATCTTTCAAGAAGGGCTTGTGCGCATCGCCGAGCAGTACCTCAAGAAGGGCTCCAAGGTTTACATC
GAAGGCCAATTGCAGACCCGCAAATGGCAAGATCAAAGCGGTACCGACAAGTACAGCACCGAGATCGTGTTGCAAGGCTT
TAACGGCACACTGACCATGCTCGACGGTCGCGATGGCGGTGGTGGCGGAGGCGGCGGCGGAGGTGGCGGAGGTGGTTATG
ACGACCGCGGCGCAGGCGGCGGTGGCTATGATCAAGGCTATGACAGCGGCCCATCCTCTTCCGGTGGTGGCGGCGGTCAA
GGCGGTGGCGGTCAAGGTGGCGGATCACGCGATCTGGACGATGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345QNG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.368

100

0.506
  ssb Vibrio cholerae strain A1552

50.575

97.753

0.494
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.399
  ssb Neisseria meningitidis MC58

39.665

100

0.399

Multiple sequence alignment