Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RL_RS12375 Genome accession   NC_008380
Coordinates   2527975..2528484 (+) Length   169 a.a.
NCBI ID   WP_011651967.1    Uniprot ID   -
Organism   Rhizobium johnstonii 3841     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2522975..2533484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL_RS12360 (RL2396) - 2523502..2524308 (-) 807 WP_011651964.1 DUF72 domain-containing protein -
  RL_RS12365 (RL2397) - 2524333..2524794 (-) 462 WP_011651965.1 GNAT family N-acetyltransferase -
  RL_RS12370 (RL2398) uvrA 2524791..2527712 (-) 2922 WP_011651966.1 excinuclease ABC subunit UvrA -
  RL_RS12375 (RL2399) ssb 2527975..2528484 (+) 510 WP_011651967.1 single-stranded DNA-binding protein Machinery gene
  RL_RS12380 (RL2400) - 2528609..2529256 (-) 648 WP_011651968.1 MarC family protein -
  RL_RS39700 - 2529318..2529500 (+) 183 WP_129557794.1 hypothetical protein -
  RL_RS12385 (RL2401) gyrA 2529493..2532330 (+) 2838 WP_011651969.1 DNA gyrase subunit A -
  RL_RS41005 - 2532514..2532648 (-) 135 WP_018445350.1 hypothetical protein -
  RL_RS40145 - 2532685..2532840 (-) 156 WP_003539654.1 hypothetical protein -
  RL_RS41135 - 2532975..2533253 (-) 279 WP_028744078.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18080.82 Da        Isoelectric Point: 5.3175

>NTDB_id=26394 RL_RS12375 WP_011651967.1 2527975..2528484(+) (ssb) [Rhizobium johnstonii 3841]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPASSPSRGGGGGGNFS
RDLDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=26394 RL_RS12375 WP_011651967.1 2527975..2528484(+) (ssb) [Rhizobium johnstonii 3841]
ATGGCTGGTAGCGTGAATAAGGTAATTCTGATTGGAAACGTCGGTGCGGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACTTGGCGCGACCGCAATTCCGGCGAGCGCCGTGAAAAGACTGAAT
GGCACACTGTCGTCGTCTTCAACGAGGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGATCGCTACAGCACGGAAGTGGTGCTGCAGGGTTT
CGGCTCGACGCTTACGATGCTCGACGGCCGCGGTGAAGGTGGCGGTGCGAGCGGCGGCCGTGGCAGTGCCGGTGGCGGCA
ACGATTATGGCGACGATTACGGCGCCCCGGCTCCCGCCTCATCGCCGAGCCGCGGCGGTGGCGGCGGCGGCAACTTCTCG
CGGGATCTCGATGATGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.289

100

0.515
  ssb Glaesserella parasuis strain SC1401

43.979

100

0.497
  ssb Neisseria meningitidis MC58

39.011

100

0.42
  ssb Neisseria gonorrhoeae MS11

38.547

100

0.408

Multiple sequence alignment