Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C1O30_RS17340 | Genome accession | NZ_CP025799 |
| Coordinates | 3844414..3844962 (+) | Length | 182 a.a. |
| NCBI ID | WP_012886084.1 | Uniprot ID | D2BVZ8 |
| Organism | Dickeya zeae strain MS2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3844414..3864471 | 3844414..3844962 | within | 0 |
| IScluster/Tn | 3845210..3846330 | 3844414..3844962 | flank | 248 |
Gene organization within MGE regions
Location: 3844414..3864471
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1O30_RS17340 (C1O30_17340) | ssb | 3844414..3844962 (+) | 549 | WP_012886084.1 | single-stranded DNA-binding protein | Machinery gene |
| C1O30_RS17345 (C1O30_17345) | - | 3845210..3846330 (+) | 1121 | WP_102802316.1 | IS3 family transposase | - |
| C1O30_RS17355 (C1O30_17355) | drt3a | 3846567..3847916 (+) | 1350 | WP_102802318.1 | antiviral reverse transcriptase Drt3a | - |
| C1O30_RS17360 (C1O30_17360) | drt3b | 3847909..3849951 (+) | 2043 | WP_102802319.1 | antiviral reverse transcriptase Drt3b | - |
| C1O30_RS17370 (C1O30_17370) | - | 3850677..3853832 (-) | 3156 | WP_102802320.1 | DEAD/DEAH box helicase | - |
| C1O30_RS17375 (C1O30_17375) | - | 3853822..3854640 (-) | 819 | WP_085455645.1 | Hachiman antiphage defense system protein HamA | - |
| C1O30_RS17380 (C1O30_17380) | - | 3854999..3855574 (-) | 576 | WP_102802321.1 | flavin reductase family protein | - |
| C1O30_RS17385 (C1O30_17385) | - | 3855617..3856246 (-) | 630 | WP_102802322.1 | NAD-dependent dehydratase | - |
| C1O30_RS17390 (C1O30_17390) | - | 3856525..3857106 (+) | 582 | WP_102802323.1 | DUF4255 domain-containing protein | - |
| C1O30_RS17395 (C1O30_17395) | - | 3857103..3857912 (+) | 810 | WP_102802324.1 | hypothetical protein | - |
| C1O30_RS17400 (C1O30_17400) | - | 3858049..3859602 (+) | 1554 | WP_102802325.1 | phage tail sheath C-terminal domain-containing protein | - |
| C1O30_RS17405 (C1O30_17405) | - | 3859664..3860134 (+) | 471 | WP_012886094.1 | phage tail protein | - |
| C1O30_RS17410 (C1O30_17410) | - | 3860241..3860699 (+) | 459 | WP_023640712.1 | phage tail protein | - |
| C1O30_RS17415 (C1O30_17415) | - | 3860720..3860920 (+) | 201 | WP_102802326.1 | hypothetical protein | - |
| C1O30_RS17420 (C1O30_17420) | - | 3860935..3861582 (+) | 648 | WP_019843442.1 | hypothetical protein | - |
| C1O30_RS17425 (C1O30_17425) | vgrG | 3861595..3863385 (+) | 1791 | WP_102802327.1 | type VI secretion system tip protein VgrG | - |
| C1O30_RS17435 (C1O30_17435) | - | 3863750..3864049 (+) | 300 | WP_012768437.1 | PAAR domain-containing protein | - |
| C1O30_RS17440 (C1O30_17440) | - | 3864052..3864471 (+) | 420 | WP_102802328.1 | GPW/gp25 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 19464.46 Da Isoelectric Point: 5.2440
>NTDB_id=263922 C1O30_RS17340 WP_012886084.1 3844414..3844962(+) (ssb) [Dickeya zeae strain MS2]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGNMGGNTGGGNAPQGGWGQPQQPQQANQFSGGGQSR
PQQSAPMPGNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGNMGGNTGGGNAPQGGWGQPQQPQQANQFSGGGQSR
PQQSAPMPGNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=263922 C1O30_RS17340 WP_012886084.1 3844414..3844962(+) (ssb) [Dickeya zeae strain MS2]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCCCTCTACGGCAAGCTGGCAGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGCAGGATCAGGGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGTACCGGCGGCGGCGCACCTGCTGGTGGCAACATGGGTGGCAATACGGGTGGTG
GTAACGCACCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGCCAGTCACGT
CCGCAGCAAAGCGCCCCGATGCCGGGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTAG
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCCCTCTACGGCAAGCTGGCAGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGCAGGATCAGGGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGTACCGGCGGCGGCGCACCTGCTGGTGGCAACATGGGTGGCAATACGGGTGGTG
GTAACGCACCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGCCAGTCACGT
CCGCAGCAAAGCGCCCCGATGCCGGGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.656 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
55.319 |
100 |
0.571 |
| ssb | Neisseria meningitidis MC58 |
45.263 |
100 |
0.473 |
| ssb | Neisseria gonorrhoeae MS11 |
45.263 |
100 |
0.473 |