Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   C1S74_RS05650 Genome accession   NZ_CP025794
Coordinates   1100818..1103076 (-) Length   752 a.a.
NCBI ID   WP_045403627.1    Uniprot ID   -
Organism   Vibrio hyugaensis strain 090810a     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1095818..1108076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S74_RS05630 kdsB 1097110..1097865 (-) 756 WP_045403631.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C1S74_RS05635 - 1097865..1098044 (-) 180 WP_005378451.1 Trm112 family protein -
  C1S74_RS05640 lpxK 1098025..1099032 (-) 1008 WP_045403630.1 tetraacyldisaccharide 4'-kinase -
  C1S74_RS05645 msbA 1099038..1100786 (-) 1749 WP_045403628.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  C1S74_RS05650 comEC 1100818..1103076 (-) 2259 WP_045403627.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C1S74_RS05655 - 1103085..1103594 (+) 510 WP_045403625.1 DUF2062 domain-containing protein -
  C1S74_RS05660 lolE 1103794..1105038 (-) 1245 WP_045403623.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  C1S74_RS05665 lolD 1105041..1105748 (-) 708 WP_045403621.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  C1S74_RS05670 lolC 1105741..1106949 (-) 1209 WP_045403620.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  C1S74_RS05675 - 1107201..1107770 (+) 570 WP_045403618.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84188.16 Da        Isoelectric Point: 9.5346

>NTDB_id=263823 C1S74_RS05650 WP_045403627.1 1100818..1103076(-) (comEC) [Vibrio hyugaensis strain 090810a]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIIAIGSIIKLRRGLISIGVISGCMVVIVHGNVMEHQRQALFQAGV
NITIIGKVDSPFTQISHGYEGIAVVNGVNSQNLLPFLKPKIRLITPFPLPVNSDFTTQVSLKPILGLRNEAGFDSEQQAF
GQGIVARATSSRNAKWQIRSSYSARQQIIQSVSGSISRLKHYQLINALAFSDRSLLTHQDWQQLRDSGLLHLVSISGLHI
GMAFSFGIFAGVALRYVFFNLQLLPPVIGIITAFLYAWLADFSLPTIRAFSVCVIYVSLKFWLVYWSAWRVLLLAVAIQL
CIEPFASLSLSFWLSYLSVAAVLLAVNAVQSHKGDWKDKLILLLKVQLVLTLLIVPISGYFFSGTSLASIIYNLVFIPWF
GMIVVPLMFLALMFSLCSYFISAWFWQGMDWALWPLSWSLPFAIGSWQFLSLKATLLVGVVSACLLLGRFFRSNGLHLLL
LVTICVVFFHDSTRDRWRVDVLDVGHGLAVLIEKGGKVLLYDTGKGWGSGSIAEQVIAPTLHRRGYGSIDGFIISHADSD
HAGGRQYIESAFNPTNKFSSQNYTGYRACVAGEYWSWQSLNIEVLWPPKLVQRAYNPHSCVIRMVDSQSGFRLLLTGDIE
AISEWILMREPEKLESDVMLVPHHGSKSSSNPKFVQAVSPKLAITSLAKSNQWGMPADNVKLAYQAANSQWLDTGSHGQV
TVFIDRDNWHFETKRSETFDPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=263823 C1S74_RS05650 WP_045403627.1 1100818..1103076(-) (comEC) [Vibrio hyugaensis strain 090810a]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCATTATTTGTCGCGAGCGTTATTTCGTCTGCATGGTGGCCGACGATGCC
AGATTGGCGATGGTTGCTGCTGGGAATAATTGCCATTGGCTCAATAATCAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTTCGGGCTGTATGGTTGTTATTGTCCACGGCAATGTTATGGAACATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGGTGGTTAACGG
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGTCTGATAACCCCTTTCCCACTGCCTGTTAACAGTG
ACTTTACTACTCAAGTTTCACTTAAACCCATTCTAGGGTTGAGAAATGAAGCGGGTTTTGATTCTGAGCAACAAGCCTTT
GGGCAGGGAATTGTTGCAAGAGCCACGTCCTCACGTAATGCCAAGTGGCAGATTCGTTCTTCTTACTCTGCTCGTCAGCA
AATCATTCAGTCGGTTTCTGGAAGCATCTCGCGCCTCAAACATTATCAACTCATCAATGCGCTCGCCTTTAGTGACCGCT
CACTTTTAACGCATCAAGATTGGCAGCAGCTACGGGATAGTGGGTTATTGCACCTTGTCTCTATTTCCGGTTTGCATATT
GGGATGGCATTCAGTTTTGGTATTTTCGCCGGGGTTGCGCTTCGGTATGTTTTTTTCAATCTCCAGCTGTTACCACCTGT
CATTGGGATTATCACTGCGTTTTTGTACGCTTGGCTTGCAGATTTTTCTTTGCCGACGATAAGAGCTTTTTCTGTCTGTG
TTATTTATGTGTCATTAAAGTTTTGGCTGGTGTATTGGAGCGCTTGGCGTGTACTGCTGTTAGCAGTCGCTATTCAGCTT
TGCATTGAACCTTTTGCTTCTCTCAGTCTGAGTTTTTGGTTGTCGTATCTCTCTGTTGCTGCGGTACTGCTTGCGGTGAA
TGCCGTTCAGAGCCACAAGGGGGATTGGAAGGACAAGTTGATCTTGTTGTTGAAAGTACAGTTAGTACTTACTTTGTTGA
TCGTGCCGATCAGCGGGTATTTCTTCTCTGGCACCAGTCTAGCCTCAATTATTTATAACCTAGTATTTATACCTTGGTTT
GGGATGATTGTGGTTCCTCTGATGTTTCTTGCGCTCATGTTTTCGCTTTGCTCTTATTTCATTTCGGCGTGGTTTTGGCA
AGGCATGGACTGGGCGTTATGGCCATTGAGTTGGTCTTTACCCTTTGCCATAGGGAGTTGGCAGTTTCTCAGTTTAAAAG
CAACGCTTCTTGTTGGTGTGGTAAGTGCTTGTCTTTTACTTGGTCGCTTTTTTCGATCTAACGGACTGCATTTATTACTT
TTGGTCACGATTTGTGTGGTGTTCTTTCATGATTCCACTAGAGACCGATGGCGAGTGGATGTTCTCGATGTCGGGCATGG
GCTTGCAGTGTTAATCGAAAAAGGCGGCAAGGTATTGCTTTATGACACAGGGAAAGGATGGGGGAGCGGTAGCATTGCTG
AGCAGGTTATCGCCCCGACTTTGCATCGTCGAGGTTACGGTTCCATCGATGGGTTCATCATTAGCCATGCGGACTCTGAC
CATGCAGGAGGTCGTCAATACATCGAAAGTGCTTTCAATCCGACCAATAAGTTCAGCAGCCAGAATTACACTGGCTATAG
AGCGTGCGTTGCAGGGGAATACTGGTCGTGGCAATCCTTGAATATTGAAGTGTTGTGGCCACCGAAGTTGGTTCAGCGTG
CCTACAATCCCCACTCTTGTGTGATTAGGATGGTCGATTCTCAATCTGGTTTCCGTCTGCTGCTGACGGGAGATATTGAA
GCCATAAGTGAATGGATACTCATGCGCGAGCCTGAGAAGCTAGAAAGTGATGTGATGTTGGTTCCTCACCATGGCAGCAA
GAGTTCTTCGAACCCCAAATTTGTTCAAGCGGTTTCTCCCAAATTAGCCATTACTTCTCTCGCGAAAAGTAATCAATGGG
GGATGCCAGCTGACAATGTGAAACTTGCTTACCAAGCTGCTAACTCGCAGTGGCTAGATACGGGGAGTCATGGGCAAGTG
ACCGTGTTTATTGATCGAGATAATTGGCATTTTGAAACCAAACGCAGTGAGACATTTGATCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-467)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

73.67

100

0.737
  comEC Vibrio parahaemolyticus RIMD 2210633

65.426

100

0.654
  comEC Vibrio cholerae strain A1552

43.501

100

0.436

Multiple sequence alignment