Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   C1S73_RS05855 Genome accession   NZ_CP025792
Coordinates   1252974..1253273 (-) Length   99 a.a.
NCBI ID   WP_038865551.1    Uniprot ID   A0A2N7MZ80
Organism   Vibrio jasicida 090810c     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1247974..1258273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS05830 - 1248396..1249610 (+) 1215 WP_005437583.1 pyridoxal phosphate-dependent aminotransferase -
  C1S73_RS05835 yfbR 1249725..1250309 (+) 585 WP_038865545.1 5'-deoxynucleotidase -
  C1S73_RS05840 - 1250313..1251647 (+) 1335 WP_042602167.1 anti-phage deoxyguanosine triphosphatase -
  C1S73_RS05845 - 1251667..1252284 (-) 618 WP_038865547.1 DTW domain-containing protein -
  C1S73_RS05850 rrtA 1252288..1252839 (+) 552 WP_038865549.1 rhombosortase -
  C1S73_RS05855 comEA 1252974..1253273 (-) 300 WP_038865551.1 helix-hairpin-helix domain-containing protein Machinery gene
  C1S73_RS05860 ppiD 1253419..1255278 (-) 1860 WP_038865553.1 peptidylprolyl isomerase -
  C1S73_RS05865 - 1255493..1255765 (-) 273 WP_005430934.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10778.49 Da        Isoelectric Point: 6.9814

>NTDB_id=263775 C1S73_RS05855 WP_038865551.1 1252974..1253273(-) (comEA) [Vibrio jasicida 090810c]
MKWMLTLCLMLLAPVGWAAGGETTKSKSSKYEGIEITVNVNTASAEEIATLLNGIGEKKAEQIVEYREEHGPFKTAADLS
KVKGIGEATVKKNQERILL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=263775 C1S73_RS05855 WP_038865551.1 1252974..1253273(-) (comEA) [Vibrio jasicida 090810c]
ATGAAATGGATGTTAACGCTGTGCTTAATGCTATTGGCACCAGTGGGATGGGCGGCCGGCGGTGAGACAACAAAGTCGAA
ATCGTCGAAATACGAAGGTATTGAGATTACTGTTAATGTGAATACCGCTTCAGCGGAAGAGATCGCGACATTACTTAATG
GTATTGGCGAGAAGAAAGCCGAACAGATAGTAGAGTATCGTGAAGAGCACGGTCCATTCAAAACGGCAGCGGACCTAAGC
AAAGTGAAAGGCATTGGGGAAGCAACGGTGAAGAAAAACCAAGAGCGAATTTTGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7MZ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

76.768

100

0.768
  comEA Vibrio parahaemolyticus RIMD 2210633

71.717

100

0.717
  comEA Vibrio cholerae C6706

56.566

100

0.566
  comEA Vibrio cholerae strain A1552

56.566

100

0.566

Multiple sequence alignment