Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   C1S73_RS03665 Genome accession   NZ_CP025792
Coordinates   770620..771207 (-) Length   195 a.a.
NCBI ID   WP_038868704.1    Uniprot ID   A0A2N7N085
Organism   Vibrio jasicida 090810c     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 765620..776207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS03645 - 765770..767032 (-) 1263 WP_038868701.1 DUF945 family protein -
  C1S73_RS03650 - 767218..769158 (+) 1941 WP_038868754.1 ATP-binding protein -
  C1S73_RS03655 - 769155..769652 (+) 498 WP_038868702.1 response regulator -
  C1S73_RS03660 - 769860..770408 (+) 549 WP_038868703.1 hypothetical protein -
  C1S73_RS03665 tfoX 770620..771207 (-) 588 WP_038868704.1 TfoX/Sxy family DNA transformation protein Regulator
  C1S73_RS03680 - 771578..772498 (+) 921 WP_038868706.1 HDOD domain-containing protein -
  C1S73_RS03685 - 772606..773511 (+) 906 WP_038868707.1 lysine exporter LysO family protein -
  C1S73_RS03690 - 773720..774232 (+) 513 WP_038868708.1 hypothetical protein -
  C1S73_RS03695 panP 774354..776000 (+) 1647 WP_038868709.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22295.53 Da        Isoelectric Point: 5.8420

>NTDB_id=263771 C1S73_RS03665 WP_038868704.1 770620..771207(-) (tfoX) [Vibrio jasicida 090810c]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGDELDAEFTQLNCEKYKHVKKQTTATVNYYDV
TDLFDAGFAGLDTLLQKSIDCSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVETFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGVHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=263771 C1S73_RS03665 WP_038868704.1 770620..771207(-) (tfoX) [Vibrio jasicida 090810c]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTATCAGAAACGTTCAATGTTCGGCGGCAT
TGGTTTATTTAGCAATGACGCTATGTTTGCTCTTGTAAGTAACGACTGTTGCTACTTGCGCGGCGGAGACGAACTCGACG
CAGAATTTACTCAACTTAACTGTGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACAGTTAACTACTATGACGTA
ACAGACTTATTCGATGCTGGCTTTGCTGGTCTTGATACGTTGTTACAAAAATCTATAGATTGTTCAATTAAGGAACGTAA
ATACCAAAAGTCCTCAGCCAGTAGACGCCTACGTGATCTGCCAAACATGCAACTGACGTTAGAACGTATGGTGAAAAAAG
CAGGAATCGATGACGTAGAGACGTTTTTGGAACTTGGCCCAGTGGAAGTATTCAATAAAGTAAGAGTTGCGTACGGCAGT
GATGTCGACGTGAAGCTTTTATGGAAATTTGCTGGTGCAATTGACGGCGTTCATTGGAAACTTATCCAAGAGCCACGTAA
AAAGCAGCTACTGGCAATGTGTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7N085

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

95.385

100

0.954
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.795

100

0.918
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

69.43

98.974

0.687
  tfoX Vibrio cholerae strain A1552

69.43

98.974

0.687
  tfoX Aliivibrio fischeri ES114

59.686

97.949

0.585

Multiple sequence alignment