Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WM46_RS22205 Genome accession   NZ_CP025757
Coordinates   4545713..4546261 (+) Length   182 a.a.
NCBI ID   WP_102603350.1    Uniprot ID   A0A2K9PGP0
Organism   Citrobacter freundii complex sp. CFNIH2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4540713..4551261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM46_RS22180 (WM46_22075) dnaB-PI 4541326..4542684 (+) 1359 WP_102603348.1 SPI-7-type island replicative DNA helicase -
  WM46_RS22185 (WM46_22080) - 4542681..4543511 (+) 831 Protein_4236 ParB family protein -
  WM46_RS22190 (WM46_22085) - 4543480..4544295 (+) 816 WP_262360507.1 DNA topoisomerase -
  WM46_RS22195 (WM46_22090) - 4544921..4545418 (+) 498 WP_102603876.1 STY4534 family ICE replication protein -
  WM46_RS22200 (WM46_22095) - 4545492..4545695 (+) 204 WP_102603349.1 hypothetical protein -
  WM46_RS22205 (WM46_22100) ssb 4545713..4546261 (+) 549 WP_102603350.1 single-stranded DNA-binding protein Machinery gene
  WM46_RS22210 (WM46_22105) - 4546441..4546725 (+) 285 WP_102603351.1 DUF1778 domain-containing protein -
  WM46_RS22215 (WM46_22110) - 4546716..4547198 (+) 483 WP_102603352.1 GNAT family N-acetyltransferase -
  WM46_RS22220 (WM46_22115) - 4547479..4548123 (+) 645 WP_410374616.1 PilL N-terminal domain-containing protein -
  WM46_RS26905 - 4548120..4548287 (+) 168 WP_410374617.1 TcpQ domain-containing protein -
  WM46_RS22225 (WM46_22120) pilM 4548325..4548726 (+) 402 WP_410374633.1 type IV pilus biogenesis protein PilM -
  WM46_RS22230 (WM46_22125) - 4548738..4550408 (+) 1671 WP_102603354.1 PilN family type IVB pilus formation outer membrane protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19865.18 Da        Isoelectric Point: 7.3566

>NTDB_id=263711 WM46_RS22205 WP_102603350.1 4545713..4546261(+) (ssb) [Citrobacter freundii complex sp. CFNIH2]
MASRGINKVILVGHLGQDPEVRYLPNSTAVTGLSIATSESWRDKQSGEMKENTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLRTRKWTDNGGVERWTTEVVVSVNGTMQMLGGRNTQAGSGNAHQSGQAQGGWGQPQQPQSQQPAAPRNPANEPPMDF
DDDIPFLGHGYGICRKAIYAIS

Nucleotide


Download         Length: 549 bp        

>NTDB_id=263711 WM46_RS22205 WP_102603350.1 4545713..4546261(+) (ssb) [Citrobacter freundii complex sp. CFNIH2]
ATGGCAAGTCGCGGAATTAATAAAGTTATTCTCGTTGGTCATCTCGGTCAGGACCCTGAAGTGCGTTATTTGCCAAACAG
CACCGCAGTAACAGGGTTGAGCATTGCAACATCAGAGTCCTGGCGTGATAAACAAAGCGGTGAAATGAAGGAAAATACTG
AGTGGCACCGTGTTGTGTTGTTTGGCAAGCTCGCCGAAGTAGCCGGTGAATACCTGAAAAAAGGTTCACAGGTCTATATT
GAAGGCCAGTTGCGTACCCGCAAATGGACCGACAATGGCGGGGTTGAACGCTGGACAACAGAGGTTGTGGTTAGTGTAAA
CGGGACGATGCAGATGCTCGGTGGTCGTAATACCCAGGCCGGTTCCGGGAATGCTCATCAGTCTGGTCAGGCTCAGGGAG
GTTGGGGGCAGCCTCAACAGCCTCAGTCTCAGCAGCCAGCTGCACCACGTAATCCTGCTAATGAACCTCCAATGGATTTT
GACGATGACATACCGTTCCTTGGGCACGGTTATGGGATCTGCCGAAAAGCGATCTACGCCATTTCCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9PGP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

65.169

97.802

0.637
  ssb Glaesserella parasuis strain SC1401

50.27

100

0.511
  ssb Neisseria meningitidis MC58

46.893

97.253

0.456
  ssb Neisseria gonorrhoeae MS11

46.893

97.253

0.456

Multiple sequence alignment