Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DV114_RS02895 Genome accession   NZ_CP031251
Coordinates   584741..585415 (+) Length   224 a.a.
NCBI ID   WP_101755612.1    Uniprot ID   A0A9X7F6V4
Organism   Neisseria subflava strain M18660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 579741..590415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS02875 - 579827..581122 (-) 1296 WP_101755613.1 FAD-binding oxidoreductase -
  DV114_RS02880 - 581272..582159 (-) 888 WP_003679574.1 ABC transporter permease subunit -
  DV114_RS02885 - 582159..583124 (-) 966 WP_003746146.1 ABC transporter permease subunit -
  DV114_RS02890 potA 583140..584264 (-) 1125 WP_003746147.1 polyamine ABC transporter ATP-binding protein -
  DV114_RS02895 radC 584741..585415 (+) 675 WP_101755612.1 DNA repair protein RadC Machinery gene
  DV114_RS02900 - 585475..585741 (-) 267 WP_101755611.1 NF038104 family lipoprotein -
  DV114_RS02905 - 585729..586061 (-) 333 WP_101755623.1 general secretion pathway protein GspG -
  DV114_RS02910 aqpZ 586209..586907 (-) 699 WP_101755610.1 aquaporin Z -
  DV114_RS02915 - 587253..590306 (-) 3054 WP_101755609.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24835.67 Da        Isoelectric Point: 6.3505

>NTDB_id=263589 DV114_RS02895 WP_101755612.1 584741..585415(+) (radC) [Neisseria subflava strain M18660]
MSIKEWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLSEFGSLGKLMSADAKTLAAYKGMGLASYT
QFAVVKEIGRRILGEDLQEQMVLSNPKSVADYLRLHLGHEKIEVSVALLLNRQNQLIAVRELSRGTVAENTVYIREIVKL
VLDEYADSLILAHNHPGGSARPSESDVQFTERLKQALSLVDITLLDHFIVTAKETCSLREQGYM

Nucleotide


Download         Length: 675 bp        

>NTDB_id=263589 DV114_RS02895 WP_101755612.1 584741..585415(+) (radC) [Neisseria subflava strain M18660]
ATGAGCATTAAAGAATGGCCCGAGGGGGAGCGGCCGCGTGAGAAGCTGTTGGAGCGCGGCGCGGCGGCGTTGAGTGATGC
GGAGTTGCTGGCGATTTTATTGCGTGTCGGAACACGCGGCATGAGCGCGGTCGATTTGGCGCGTTATTTGTTGAGTGAGT
TTGGCAGCTTGGGGAAGCTGATGAGTGCGGATGCTAAAACACTTGCTGCTTATAAGGGCATGGGCTTGGCGAGTTATACT
CAGTTTGCAGTGGTCAAAGAAATCGGGCGGCGGATTTTGGGTGAAGATTTGCAGGAGCAGATGGTTTTGTCAAACCCGAA
ATCGGTTGCGGATTATCTGCGCTTGCATCTTGGGCATGAAAAAATCGAAGTCAGCGTTGCGTTGCTGCTCAACCGTCAAA
ATCAATTGATTGCGGTACGGGAATTGTCGCGCGGTACGGTGGCGGAAAACACGGTTTATATCCGTGAAATTGTCAAATTG
GTATTGGATGAATACGCCGACAGTTTGATTTTGGCACACAATCATCCGGGCGGCTCGGCAAGGCCGTCTGAATCTGATGT
GCAGTTTACAGAGCGTTTGAAACAGGCTTTAAGTTTGGTGGATATTACGCTCTTGGACCATTTTATCGTAACGGCAAAAG
AAACCTGTTCTTTGCGTGAACAAGGCTATATGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-79)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X7F6V4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.429

93.75

0.388
  radC Streptococcus pneumoniae TIGR4

39.336

94.196

0.371
  radC Streptococcus pneumoniae R6

38.863

94.196

0.366
  radC Streptococcus pneumoniae D39

38.863

94.196

0.366
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

36.607

100

0.366