Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SSA_RS11030 Genome accession   NC_009009
Coordinates   2249524..2250114 (-) Length   196 a.a.
NCBI ID   WP_011837647.1    Uniprot ID   A3CR11
Organism   Streptococcus sanguinis SK36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2244524..2255114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS11005 - 2246569..2246907 (-) 339 WP_002894090.1 hypothetical protein -
  SSA_RS11010 (SSA_2251) - 2247209..2248057 (+) 849 WP_011837644.1 helix-turn-helix domain-containing protein -
  SSA_RS11015 - 2248067..2248174 (-) 108 Protein_2141 DNA-3-methyladenine glycosylase I -
  SSA_RS11020 (SSA_2252) - 2248302..2248955 (-) 654 Protein_2142 CPBP family intramembrane glutamic endopeptidase -
  SSA_RS11025 (SSA_2253) - 2248960..2249514 (-) 555 WP_011837646.1 DNA-3-methyladenine glycosylase I -
  SSA_RS11030 (SSA_2254) ruvA 2249524..2250114 (-) 591 WP_011837647.1 Holliday junction branch migration protein RuvA Machinery gene
  SSA_RS11035 (SSA_2255) - 2250284..2250790 (+) 507 WP_011837648.1 helix-turn-helix domain-containing protein -
  SSA_RS11040 (SSA_2256) - 2250774..2251295 (+) 522 WP_033179235.1 RDD family protein -
  SSA_RS11045 (SSA_2257) hexB 2251331..2253274 (-) 1944 WP_011837650.1 DNA mismatch repair endonuclease MutL Machinery gene
  SSA_RS11050 (SSA_2258) - 2253479..2254789 (-) 1311 WP_011837651.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21525.92 Da        Isoelectric Point: 5.7568

>NTDB_id=26344 SSA_RS11030 WP_011837647.1 2249524..2250114(-) (ruvA) [Streptococcus sanguinis SK36]
MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSGQLHQEAKVYVHQVVREDAELLYGFATEEEKQLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVAAGSPAESKAPVQTADNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=26344 SSA_RS11030 WP_011837647.1 2249524..2250114(-) (ruvA) [Streptococcus sanguinis SK36]
ATGTACGAATATTTTAAAGGAATCATCAGTAAAATCACAGCCAAGTATATTGTGTTGGAAGTCAACTCTATCGGCTATAT
TCTTCATGTGGCCAATCCCTATGCTTACTCAGGGCAGCTTCATCAGGAAGCCAAGGTCTATGTTCACCAAGTAGTGAGAG
AAGACGCGGAACTGCTGTATGGCTTTGCGACCGAGGAGGAGAAACAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATC
GGCCCAGTGTCTGCTCTGGCTATCATTGCGGCGGATGATAATGCTGGCTTAGTGCAAGCCATTGAGCAAAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGTAAGAAAACTGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTGGCGG
CAGGCAGCCCAGCAGAAAGCAAGGCACCTGTCCAGACTGCGGATAATCAGGAGCTGGAGGAAGCTATGGAAGCCATGCTG
GCTTTGGGTTACAAGGCTGCTGAACTCAAGAAAATCAAGAAATTCTTTGAGGGCACAACGGACACAGCTGAAAACTATAT
CAAGTCAGCCCTCAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CR11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

86.294

100

0.867
  ruvA Streptococcus pneumoniae R6

86.294

100

0.867
  ruvA Streptococcus pneumoniae D39

86.294

100

0.867
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.439

100

0.444

Multiple sequence alignment