Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BH100N_RS05635 Genome accession   NZ_CP025703
Coordinates   1121818..1122447 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain BH100N substr. MG2017     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1116818..1127447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BH100N_RS05610 (BH100N_01066) ycbZ 1117220..1118980 (-) 1761 WP_000156496.1 Lon protease family protein -
  BH100N_RS05615 (BH100N_01067) matP 1119166..1119618 (+) 453 WP_000877152.1 macrodomain Ter protein MatP -
  BH100N_RS05620 (BH100N_01068) ompA 1119694..1120734 (-) 1041 WP_001313715.1 porin OmpA -
  BH100N_RS05630 (BH100N_01070) sulA 1121090..1121599 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  BH100N_RS05635 (BH100N_01071) sxy/tfoX 1121818..1122447 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BH100N_RS05640 (BH100N_01072) yccS 1122410..1124572 (-) 2163 WP_000875067.1 YccS family putative transporter -
  BH100N_RS05645 (BH100N_01073) yccF 1124582..1125028 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BH100N_RS05650 (BH100N_01074) helD 1125151..1127205 (+) 2055 WP_001541157.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=263434 BH100N_RS05635 WP_000839153.1 1121818..1122447(+) (sxy/tfoX) [Escherichia coli strain BH100N substr. MG2017]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=263434 BH100N_RS05635 WP_000839153.1 1121818..1122447(+) (sxy/tfoX) [Escherichia coli strain BH100N substr. MG2017]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment