Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | C0638_RS07840 | Genome accession | NZ_CP025696 |
| Coordinates | 1731500..1731991 (+) | Length | 163 a.a. |
| NCBI ID | WP_010346813.1 | Uniprot ID | A0A3G8R109 |
| Organism | Paenibacillus sp. lzh-N1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1726500..1736991
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0638_RS07800 (C0638_07800) | - | 1727100..1727621 (+) | 522 | WP_040102457.1 | DUF4446 family protein | - |
| C0638_RS07805 (C0638_07805) | yyaC | 1727575..1728180 (-) | 606 | WP_082689681.1 | spore protease YyaC | - |
| C0638_RS07810 (C0638_07810) | - | 1728431..1729381 (+) | 951 | WP_013373910.1 | mechanosensitive ion channel family protein | - |
| C0638_RS07815 (C0638_07815) | - | 1729371..1729595 (+) | 225 | WP_013373909.1 | DUF951 domain-containing protein | - |
| C0638_RS07825 (C0638_07825) | - | 1729969..1730286 (-) | 318 | WP_016822453.1 | hypothetical protein | - |
| C0638_RS07830 (C0638_07830) | - | 1730653..1730847 (-) | 195 | WP_013373906.1 | YjzC family protein | - |
| C0638_RS07835 (C0638_07835) | rpsF | 1731166..1731450 (+) | 285 | WP_007433230.1 | 30S ribosomal protein S6 | - |
| C0638_RS07840 (C0638_07840) | ssbA | 1731500..1731991 (+) | 492 | WP_010346813.1 | single-stranded DNA-binding protein | Machinery gene |
| C0638_RS07845 (C0638_07845) | rpsR | 1732013..1732285 (+) | 273 | WP_013312800.1 | 30S ribosomal protein S18 | - |
| C0638_RS07850 (C0638_07850) | - | 1732817..1734556 (+) | 1740 | WP_013373905.1 | ABC transporter substrate-binding protein | - |
| C0638_RS07855 (C0638_07855) | - | 1734625..1735587 (+) | 963 | WP_013373904.1 | ABC transporter permease | - |
| C0638_RS07860 (C0638_07860) | opp4C | 1735599..1736522 (+) | 924 | WP_013373903.1 | oligopeptide ABC transporter permease | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17928.67 Da Isoelectric Point: 4.8369
>NTDB_id=263407 C0638_RS07840 WP_010346813.1 1731500..1731991(+) (ssbA) [Paenibacillus sp. lzh-N1]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDSGNGGGNSGGGMREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDSGNGGGNSGGGMREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=263407 C0638_RS07840 WP_010346813.1 1731500..1731991(+) (ssbA) [Paenibacillus sp. lzh-N1]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACAAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGTAAAGGTCGTTTGACGGCTGTTGAAGGCCGTGTACAAGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTTGCTGATAATGTACGTTTCTTGGAATCTAACCG
CGATAGCGGCAACGGTGGCGGCAATAGCGGTGGAGGTATGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GGCGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
CTACCATTTTAA
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACAAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGTAAAGGTCGTTTGACGGCTGTTGAAGGCCGTGTACAAGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTTGCTGATAATGTACGTTTCTTGGAATCTAACCG
CGATAGCGGCAACGGTGGCGGCAATAGCGGTGGAGGTATGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GGCGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
CTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60.116 |
100 |
0.638 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.292 |
100 |
0.528 |
| ssb | Neisseria meningitidis MC58 |
34.615 |
100 |
0.386 |
| ssb | Neisseria gonorrhoeae MS11 |
33.714 |
100 |
0.362 |