Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   DV130_RS07780 Genome accession   NZ_CP031248
Coordinates   1462952..1463188 (-) Length   78 a.a.
NCBI ID   WP_000939548.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26365     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1457952..1468188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS07750 radA 1458246..1459607 (-) 1362 WP_075213698.1 DNA repair protein RadA Machinery gene
  DV130_RS07755 - 1459621..1460136 (-) 516 WP_000691235.1 histidine phosphatase family protein -
  DV130_RS07760 - 1460138..1460581 (-) 444 WP_000701992.1 dUTP diphosphatase -
  DV130_RS07770 tadA 1460767..1461234 (-) 468 WP_000291875.1 tRNA adenosine(34) deaminase TadA -
  DV130_RS07775 - 1461435..1462721 (-) 1287 WP_000205044.1 adenylosuccinate synthase -
  DV130_RS07780 comW 1462952..1463188 (-) 237 WP_000939548.1 sigma(X)-activator ComW Regulator
  DV130_RS07785 - 1463452..1464236 (+) 785 Protein_1498 transposase -
  DV130_RS07790 - 1464271..1464480 (-) 210 Protein_1499 transposase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9716.17 Da        Isoelectric Point: 6.7051

>NTDB_id=263388 DV130_RS07780 WP_000939548.1 1462952..1463188(-) (comW) [Streptococcus pneumoniae strain M26365]
MLQKIYEQMTNFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=263388 DV130_RS07780 WP_000939548.1 1462952..1463188(-) (comW) [Streptococcus pneumoniae strain M26365]
ATGTTACAAAAAATTTATGAGCAGATGACTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

97.436

100

0.974
  comW Streptococcus pneumoniae D39

97.436

100

0.974
  comW Streptococcus pneumoniae R6

97.436

100

0.974
  comW Streptococcus pneumoniae TIGR4

97.436

100

0.974
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756