Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NEUT_RS12475 Genome accession   NC_008344
Coordinates   2579819..2580286 (+) Length   155 a.a.
NCBI ID   WP_011635430.1    Uniprot ID   Q0ADB3
Organism   Nitrosomonas eutropha C91     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2574819..2585286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEUT_RS12465 (Neut_2459) uvrA 2575500..2578337 (-) 2838 WP_011635428.1 excinuclease ABC subunit UvrA -
  NEUT_RS12470 (Neut_2460) - 2578460..2579818 (+) 1359 WP_041353888.1 MFS transporter -
  NEUT_RS12475 (Neut_2461) ssb 2579819..2580286 (+) 468 WP_011635430.1 single-stranded DNA-binding protein Machinery gene
  NEUT_RS12480 (Neut_2462) - 2580489..2582279 (+) 1791 WP_011635431.1 ABC transporter ATP-binding protein -
  NEUT_RS12485 (Neut_2463) - 2582376..2583212 (+) 837 WP_242500179.1 cytochrome c -
  NEUT_RS12490 (Neut_2464) speE 2583258..2584217 (-) 960 WP_011635433.1 polyamine aminopropyltransferase -
  NEUT_RS12495 (Neut_2465) speD 2584217..2584624 (-) 408 WP_011635434.1 adenosylmethionine decarboxylase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17125.03 Da        Isoelectric Point: 4.8334

>NTDB_id=26332 NEUT_RS12475 WP_011635430.1 2579819..2580286(+) (ssb) [Nitrosomonas eutropha C91]
MASLNKVMLIGNLGRDPEIRYMPSGDAMANLNIATTDTWKDKGGEKQERTEWHRIVMFGKLAEITGEYLKKGSQIYIEGR
LQTRKWTDKSNVERYTTEIVADRMQMLGGRSGGGSGGNYDPPADQGNEYSSNTPAKTGTTGSSTGFDDMEDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=26332 NEUT_RS12475 WP_011635430.1 2579819..2580286(+) (ssb) [Nitrosomonas eutropha C91]
ATGGCTTCACTAAATAAAGTTATGTTGATTGGCAATCTTGGCCGCGATCCGGAAATCCGTTACATGCCCAGCGGCGATGC
CATGGCAAATCTGAATATTGCCACTACCGATACCTGGAAAGACAAGGGGGGCGAGAAACAGGAGCGCACCGAATGGCACC
GGATCGTTATGTTTGGCAAGCTGGCTGAGATTACTGGAGAATATCTGAAAAAAGGCTCACAGATTTATATCGAAGGTCGC
TTACAAACGCGCAAATGGACTGATAAATCCAACGTGGAACGCTATACCACCGAAATCGTCGCCGACCGTATGCAAATGCT
TGGTGGCCGCTCAGGTGGTGGCAGCGGTGGTAACTATGATCCACCAGCCGACCAAGGTAACGAATATTCAAGTAACACAC
CTGCTAAAACTGGCACTACAGGTAGCAGCACAGGTTTTGACGATATGGAAGACGATATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0ADB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.587
  ssb Glaesserella parasuis strain SC1401

45.556

100

0.529
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.503
  ssb Neisseria meningitidis MC58

45.087

100

0.503

Multiple sequence alignment