NTDB

Detailed information

Bioinformatically predicted

Overview
Genomic Context
Sequence
Domains
Secondary structure
3D structure
Transmembrane helices
Similar proteins

Overview

Name	comE	Type	Machinery gene
Locus tag	NEUT_RS10540	Genome accession	NC_008344
Coordinates	2194555..2194839 (+)	Length	94 a.a.
NCBI ID	WP_011635093.1	Uniprot ID	Q0AED6
Organism	Nitrosomonas eutropha C91
Function	DNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2189555..2199839

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NEUT_RS10525 (Neut_2072)	prsT	2190384..2193176 (-)	2793	WP_011635092.1	XrtA/PEP-CTERM system TPR-repeat protein PrsT	-
NEUT_RS10540 (Neut_2073)	comE	2194555..2194839 (+)	285	WP_011635093.1	ComEA family DNA-binding protein	Machinery gene
NEUT_RS10545 (Neut_2074)	-	2195446..2196033 (-)	588	WP_011635094.1	hypothetical protein	-
NEUT_RS10550 (Neut_2075)	-	2196105..2196746 (-)	642	WP_242500174.1	hypothetical protein	-
NEUT_RS10555 (Neut_2076)	-	2196913..2198178 (-)	1266	WP_011635096.1	methane monooxygenase/ammonia monooxygenase subunit B	-
NEUT_RS10560 (Neut_2077)	-	2198180..2199010 (-)	831	WP_011635097.1	methane monooxygenase/ammonia monooxygenase subunit A	-

Sequence

Protein

Download Length: 94 a.a. Molecular weight: 10069.65 Da Isoelectric Point: 6.4632

                                >NTDB_id=26326 NEUT_RS10540 WP_011635093.1 2194555..2194839(+) (comE) [Nitrosomonas eutropha C91]

MKKIFLILVIFFGLNLSVLAGVDINTASQIDLESVKGLGPAKAKAIIEYREKHGMFKSVGDLTNVKGIGVGTLRQLGDQV

SVQEETASNEAEAH

Nucleotide

Download Length: 285 bp

                                >NTDB_id=26326 NEUT_RS10540 WP_011635093.1 2194555..2194839(+) (comE) [Nitrosomonas eutropha C91]

ATGAAAAAAATTTTTTTGATTCTTGTAATATTTTTCGGGTTAAATTTATCCGTATTAGCTGGAGTAGACATCAATACAGC

AAGTCAAATTGATCTTGAGTCGGTAAAAGGTTTGGGGCCGGCCAAAGCAAAAGCGATAATTGAATATCGAGAAAAACACG

GTATGTTCAAGTCAGTAGGAGATCTAACCAATGTGAAGGGTATAGGTGTCGGGACGCTCAGACAATTAGGTGATCAGGTG

AGTGTTCAAGAGGAAACTGCTTCAAATGAAGCTGAGGCGCATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q0AED6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comE	Neisseria gonorrhoeae MS11	51.087	97.872	0.5
comE	Neisseria gonorrhoeae MS11	51.087	97.872	0.5
comE	Neisseria gonorrhoeae MS11	51.087	97.872	0.5
comE	Neisseria gonorrhoeae MS11	51.087	97.872	0.5
comEA	Vibrio parahaemolyticus RIMD 2210633	41.304	97.872	0.404
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	42.169	88.298	0.372

Detailed information NTG0026326