Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DV131_RS08390 Genome accession   NZ_CP031246
Coordinates   1556903..1557583 (+) Length   226 a.a.
NCBI ID   WP_000286922.1    Uniprot ID   Q97QW0
Organism   Streptococcus pneumoniae strain M26368     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1551903..1562583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV131_RS08370 - 1552333..1553193 (+) 861 WP_088788476.1 methionyl aminopeptidase -
  DV131_RS12210 - 1553416..1553517 (+) 102 Protein_1553 galactose-6-phosphate isomerase -
  DV131_RS08380 - 1553571..1554378 (+) 808 WP_114865921.1 IS5 family transposase -
  DV131_RS08385 pcrA 1554569..1556860 (+) 2292 WP_050308915.1 DNA helicase PcrA -
  DV131_RS08390 radC 1556903..1557583 (+) 681 WP_000286922.1 DNA repair protein RadC Machinery gene
  DV131_RS08395 - 1557580..1558269 (-) 690 WP_050090332.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DV131_RS08400 - 1558287..1558928 (-) 642 WP_000653403.1 redox-sensing transcriptional repressor Rex -
  DV131_RS11375 - 1559011..1559082 (-) 72 Protein_1559 DUF4649 domain-containing protein -
  DV131_RS08410 - 1559206..1560462 (+) 1257 WP_114865922.1 ISL3 family transposase -
  DV131_RS08415 - 1560496..1560648 (-) 153 WP_088788483.1 DUF4649 family protein -
  DV131_RS08420 - 1560656..1561003 (-) 348 WP_000863509.1 DUF1831 domain-containing protein -
  DV131_RS08425 - 1561008..1562123 (-) 1116 WP_000639669.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25535.53 Da        Isoelectric Point: 7.1203

>NTDB_id=263179 DV131_RS08390 WP_000286922.1 1556903..1557583(+) (radC) [Streptococcus pneumoniae strain M26368]
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=263179 DV131_RS08390 WP_000286922.1 1556903..1557583(+) (radC) [Streptococcus pneumoniae strain M26368]
ATGTACAGTATTTCATTCCAAGAAGATTCACTATTACCAAGAGAAAGGCTGGCCAAGGAAGGAGTTGAAGCGCTTAGTAA
CCAAGAGTTGCTAGCTATTTTACTCAGGACAGGAACACGTCAAGCTAGCGTTTTTGAAATTGCCCAAAAAGTCTTGAACA
ATCTTTCAAGCCTAACGGATTTGAAAAAAATGACCCTGCAGGAATTGCAGAGTTTGTCTGGTATTGGGCGTGTTAAGGCC
ATAGAATTACAAGCTATGATTGAACTGGGGCATCGTATTCACAAACACGAGACTCTTGAAATGGAAAGTATTCTCAGCAG
TCAAAAGTTGGCCAAGAAGATGCAGCAGGAATTAGGGGATAAAAAACAAGAGCACCTGGTGGCACTCTATCTCAATACTC
AAAATCAAATCATCCATCAGCAGACCATTTTTATCGGTTCTGTAACTCGTAGTATCGCTGAACCGCGAGAGATTCTTCAC
TATGCAATCAAGCATATGGCGACTTCTCTTATCTTGGTCCACAATCATCCTTCAGGAGCGGTAGCGCCTAGCCAAAATGA
TGATCATGTCACTAAACTTGTTAAAGAAGCCTGCGAACTGATGGGGATTGTTCTCTTGGACCATTTGATTGTCTCTCATT
CTAATTACTTTAGTTATCGTGAAAAGACAGATTTAATCTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97QW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

100

100

1
  radC Streptococcus pneumoniae R6

99.558

100

0.996
  radC Streptococcus pneumoniae D39

99.558

100

0.996
  radC Streptococcus gordonii str. Challis substr. CH1

76.106

100

0.761
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.095

92.92

0.447