Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C0058_RS29010 Genome accession   NZ_CP025624
Coordinates   6170945..6171463 (-) Length   172 a.a.
NCBI ID   WP_003210042.1    Uniprot ID   A0A1R0G976
Organism   Pseudomonas sp. NC02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6165945..6176463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0058_RS28985 (C0058_28990) - 6166159..6167268 (-) 1110 WP_102370000.1 DUF3182 family protein -
  C0058_RS28990 (C0058_28995) - 6167440..6168420 (-) 981 WP_102370001.1 GlxA family transcriptional regulator -
  C0058_RS28995 (C0058_29000) - 6168516..6169067 (+) 552 WP_102370002.1 cysteine hydrolase family protein -
  C0058_RS29000 (C0058_29005) tam 6169080..6169841 (-) 762 WP_102370003.1 trans-aconitate 2-methyltransferase -
  C0058_RS29005 (C0058_29010) - 6169945..6170853 (+) 909 WP_174717791.1 LysR family transcriptional regulator -
  C0058_RS29010 (C0058_29015) ssb 6170945..6171463 (-) 519 WP_003210042.1 single-stranded DNA-binding protein Machinery gene
  C0058_RS29015 (C0058_29020) - 6171473..6172867 (-) 1395 WP_008436436.1 MFS transporter -
  C0058_RS29020 (C0058_29025) uvrA 6173046..6175880 (+) 2835 WP_003210046.1 excinuclease ABC subunit UvrA -
  C0058_RS29025 (C0058_29030) bfr 6175949..6176413 (-) 465 WP_003210048.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19131.30 Da        Isoelectric Point: 5.9455

>NTDB_id=263146 C0058_RS29010 WP_003210042.1 6170945..6171463(-) (ssb) [Pseudomonas sp. NC02]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQQSRPQPTQQPQRESRPAPQQAAPQPA
ADFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=263146 C0058_RS29010 WP_003210042.1 6170945..6171463(-) (ssb) [Pseudomonas sp. NC02]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGCAGTCCCGTCCGCAGCCAACCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCTCAGCCGGCA
GCCGACTTCGACAGCTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0G976

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.218

100

0.616
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.5
  ssb Neisseria meningitidis MC58

46.961

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.494

Multiple sequence alignment