Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SSA_RS05970 Genome accession   NC_009009
Coordinates   1239866..1240549 (-) Length   227 a.a.
NCBI ID   WP_009660453.1    Uniprot ID   A3CN67
Organism   Streptococcus sanguinis SK36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1234866..1245549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS05940 (SSA_1212) - 1235541..1236497 (+) 957 WP_011836993.1 ribose-phosphate diphosphokinase -
  SSA_RS05945 (SSA_1213) - 1236508..1237620 (+) 1113 WP_033179264.1 cysteine desulfurase family protein -
  SSA_RS05950 (SSA_1214) - 1237622..1237969 (+) 348 WP_002902952.1 DUF1831 domain-containing protein -
  SSA_RS05955 (SSA_1215) - 1238086..1238307 (+) 222 WP_011836995.1 DUF4649 family protein -
  SSA_RS05960 (SSA_1216) - 1238432..1239079 (+) 648 WP_002915151.1 redox-sensing transcriptional repressor Rex -
  SSA_RS05965 (SSA_1217) - 1239104..1239796 (+) 693 WP_002900303.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SSA_RS05970 (SSA_1218) radC 1239866..1240549 (-) 684 WP_009660453.1 RadC family protein Machinery gene
  SSA_RS05975 (SSA_1219) - 1240672..1241427 (-) 756 WP_011836996.1 class A sortase -
  SSA_RS05980 (SSA_1220) gyrA 1241442..1243901 (-) 2460 WP_033179265.1 DNA gyrase subunit A -
  SSA_RS05985 (SSA_1221) - 1244096..1245082 (+) 987 WP_002895436.1 L-lactate dehydrogenase -
  SSA_RS05990 (SSA_1222) - 1245128..1245544 (-) 417 WP_011836998.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26007.06 Da        Isoelectric Point: 6.8431

>NTDB_id=26298 SSA_RS05970 WP_009660453.1 1239866..1240549(-) (radC) [Streptococcus sanguinis SK36]
MYSISFQDDISMMPRERLMREGAEKLSNQELLSIFLRTGNKKETVFQVSQRILSSISSLNDLKYLTLQELQTISGIGPIK
AVELQAIIELGRRINRAEVLQKEQIMGSQKLARKMQQELGDMRQECLVAIYLNSQNQILHQQTIFMGTVSRSIAEPREIL
HYALKHLATSIILVHNHPSGSVVPSRNDDEVTQHMKEACEMMGLVLLDHLIVSKSNYYSYREETDMI

Nucleotide


Download         Length: 684 bp        

>NTDB_id=26298 SSA_RS05970 WP_009660453.1 1239866..1240549(-) (radC) [Streptococcus sanguinis SK36]
ATGTATAGCATTTCATTTCAAGATGATATTAGCATGATGCCGCGGGAGCGTTTGATGAGAGAAGGGGCTGAAAAACTCAG
TAACCAAGAGCTTCTATCAATTTTCCTCAGGACAGGCAACAAAAAAGAAACTGTTTTTCAAGTTTCTCAAAGAATTTTAT
CATCGATTTCCAGTTTGAACGATCTTAAGTATTTAACTTTGCAGGAATTGCAGACTATTTCTGGAATCGGTCCGATTAAG
GCTGTGGAGCTGCAGGCCATTATCGAATTAGGACGTCGGATTAACCGAGCAGAGGTTCTGCAGAAAGAGCAGATTATGGG
CAGTCAAAAATTAGCCCGGAAGATGCAGCAGGAATTGGGAGATATGAGGCAGGAGTGCTTGGTTGCTATTTATCTTAATA
GTCAAAATCAAATTCTGCACCAGCAGACTATTTTTATGGGGACTGTCAGCAGAAGCATTGCTGAGCCGAGAGAAATTCTC
CACTACGCTCTTAAGCATCTGGCGACATCTATCATACTGGTACACAATCATCCATCAGGCTCAGTCGTTCCTAGTAGAAA
CGACGATGAGGTGACCCAGCATATGAAAGAAGCATGTGAGATGATGGGTTTGGTCCTTTTGGATCATTTGATTGTGTCCA
AGTCCAACTACTATAGCTATCGAGAGGAGACAGATATGATATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(108-223)

UPF0758 N-terminal (UPF0758_N)

(13-82)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CN67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

70.044

100

0.7
  radC Streptococcus gordonii str. Challis substr. CH1

70.044

100

0.7
  radC Streptococcus pneumoniae R6

69.604

100

0.696
  radC Streptococcus pneumoniae D39

69.604

100

0.696
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

42.381

92.511

0.392

Multiple sequence alignment