Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SHEWMR4_RS18930 Genome accession   NC_008321
Coordinates   4330977..4332503 (+) Length   508 a.a.
NCBI ID   WP_011624349.1    Uniprot ID   -
Organism   Shewanella sp. MR-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4325977..4337503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHEWMR4_RS18905 (Shewmr4_3618) - 4326019..4326969 (+) 951 WP_011624343.1 calcium/sodium antiporter -
  SHEWMR4_RS18910 (Shewmr4_3619) - 4327146..4327850 (+) 705 WP_011624344.1 hypothetical protein -
  SHEWMR4_RS18915 (Shewmr4_3620) - 4327934..4329013 (+) 1080 WP_011624345.1 sensor histidine kinase -
  SHEWMR4_RS18920 (Shewmr4_3621) - 4329013..4329609 (+) 597 WP_011624346.1 DNA-binding response regulator -
  SHEWMR4_RS18925 (Shewmr4_3622) - 4329615..4330760 (-) 1146 Protein_3638 DUF1963 domain-containing protein -
  SHEWMR4_RS18930 (Shewmr4_3624) comM 4330977..4332503 (+) 1527 WP_011624349.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SHEWMR4_RS18935 (Shewmr4_3625) - 4332602..4333504 (+) 903 WP_011624350.1 acyltransferase -
  SHEWMR4_RS18940 (Shewmr4_3626) - 4333512..4334453 (+) 942 WP_011624351.1 acyltransferase -
  SHEWMR4_RS18945 (Shewmr4_3627) - 4334490..4334954 (-) 465 WP_011624352.1 DUF523 domain-containing protein -
  SHEWMR4_RS18950 (Shewmr4_3628) - 4335287..4336075 (+) 789 WP_011624353.1 GntR family transcriptional regulator -
  SHEWMR4_RS18955 (Shewmr4_3629) prpB 4336142..4337020 (+) 879 WP_011624354.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55098.45 Da        Isoelectric Point: 8.1015

>NTDB_id=26280 SHEWMR4_RS18930 WP_011624349.1 4330977..4332503(+) (comM) [Shewanella sp. MR-4]
MAIACVQTRASCGVEAPEVIVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASEQIPASSLKNTEFVGELALSGQIRHCQGLLPAIIAAKRHNNQLILPLENRHDAELVGYHGVYFASHL
QSLAAFLHGQAPLPMLEQQLEWISDEAPTTQPCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRIMALLPI
LNYEEALEVAAIHSVAGINIKPQDFLKRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIEGANRATPDQVQRYLARLSGPFLDRFDLTIEVPKLPAGTLTQPT
STSETSDEIAKRVKRARDSQLARAGVLNSELSGKKLKQFGGLSDADLGFLEQSVVKLGLSVRSFHRIQRVARTIADLEQA
PNTERRHLAQALGYRAMDKLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=26280 SHEWMR4_RS18930 WP_011624349.1 4330977..4332503(+) (comM) [Shewanella sp. MR-4]
ATGGCGATAGCCTGCGTGCAAACCCGAGCCAGTTGCGGTGTTGAGGCTCCAGAAGTCATCGTTGAAGTGCATCTCAGTAA
TGGTCTGCCCGCCTTTAATCTGGTGGGCTTACCCGAAGCCTCGGTCAAAGAAGCGCGCGAGCGGGTACGCAGCGCCTTGA
TTAATGCAGGATTTGAATTCCCCATGCGCAGGATAACGGTTAATCTCGCGCCGGCGGACTTGCCTAAACAAGGGGGTCGT
TACGATTTGCCCATCGCCATAGGCATTCTGGCGGCTTCGGAGCAAATCCCTGCCAGCAGCCTTAAAAATACCGAATTTGT
CGGCGAACTCGCGCTCTCAGGGCAGATACGCCATTGCCAAGGGTTACTGCCAGCCATCATTGCGGCTAAGCGTCATAATA
ATCAGTTAATTCTTCCCTTAGAGAATCGCCACGATGCCGAGCTTGTGGGCTATCACGGGGTCTATTTTGCTTCCCATTTG
CAGAGCCTAGCCGCGTTTCTCCACGGACAAGCGCCATTGCCTATGCTCGAACAACAGCTCGAATGGATTAGCGATGAGGC
GCCAACCACCCAGCCTTGCCTCAGCGACGTCATAGGCCAGTATCAAGCTAAACAGGCCCTCGAAATCGCCGCGGCCGGAA
ACCATAACCTGTTGATGCTCGGCCCGCCAGGCACGGGTAAAACCATGTTAGCGAGCCGCATTATGGCGCTACTGCCCATA
CTCAATTACGAAGAGGCATTAGAGGTCGCCGCCATTCACTCGGTGGCGGGCATTAATATCAAACCGCAGGATTTTCTCAA
GCGGCCATTTCGGGCGCCGCACCATACCAGTTCATCCATCTCCTTGGTTGGTGGCGGCAGCATTCCTAAACCGGGGGAAA
TCTCCCTCGCCCATCGCGGCGTGTTATTTTTAGATGAAGTCGCCGAGTTTCCCCGCAAGGTACTCGATTGCCTGCGTGAA
CCCATGGAAACGGGCGAAGTAGTGATCTCCCGCGCCGCCGCTAAGTTAACCTTTTTGAGCCGCTTTCAGTTGATTGCCGC
CATGAATCCCAGTCCCAGCGGCGATATTGAAGGGGCGAACCGCGCCACACCCGATCAGGTTCAGCGCTATCTCGCCAGAC
TCTCGGGGCCTTTTTTAGATAGGTTCGACCTCACCATCGAAGTCCCCAAACTCCCTGCGGGTACACTCACACAACCAACA
AGTACCAGCGAAACCAGTGATGAAATCGCTAAACGAGTCAAACGCGCCCGCGATAGCCAACTCGCGCGAGCTGGCGTGCT
CAACAGTGAACTCTCGGGAAAAAAACTAAAGCAATTCGGCGGCCTTAGCGACGCCGACTTAGGCTTTTTAGAACAGAGTG
TCGTCAAGCTTGGGTTATCCGTTCGCAGCTTCCATCGGATTCAACGCGTCGCTCGCACCATTGCCGATCTTGAGCAAGCG
CCCAATACCGAACGGCGCCACCTCGCCCAAGCCTTAGGTTATCGCGCCATGGATAAGCTGCTCGCCCGTTTATCCCAGCA
GTATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.14

100

0.567
  comM Haemophilus influenzae Rd KW20

56.41

99.803

0.563
  comM Glaesserella parasuis strain SC1401

56.126

99.606

0.559
  comM Vibrio campbellii strain DS40M4

55.709

100

0.557
  comM Legionella pneumophila str. Paris

47.047

100

0.47
  comM Legionella pneumophila strain ERS1305867

47.047

100

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.347

97.638

0.423

Multiple sequence alignment