Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SHEWMR4_RS17855 Genome accession   NC_008321
Coordinates   4087443..4088153 (-) Length   236 a.a.
NCBI ID   WP_011624150.1    Uniprot ID   -
Organism   Shewanella sp. MR-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4082443..4093153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHEWMR4_RS17845 (Shewmr4_3417) - 4083745..4086570 (-) 2826 WP_049764517.1 M16 family metallopeptidase -
  SHEWMR4_RS17850 (Shewmr4_3418) - 4086751..4087314 (-) 564 WP_011624149.1 imm11 family protein -
  SHEWMR4_RS17855 (Shewmr4_3419) ssb 4087443..4088153 (-) 711 WP_011624150.1 single-stranded DNA-binding protein Machinery gene
  SHEWMR4_RS17860 (Shewmr4_3420) - 4088261..4089628 (-) 1368 WP_011624151.1 MFS transporter -
  SHEWMR4_RS17865 (Shewmr4_3421) uvrA 4090039..4092891 (+) 2853 WP_011624152.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25682.09 Da        Isoelectric Point: 5.7610

>NTDB_id=26279 SHEWMR4_RS17855 WP_011624150.1 4087443..4088153(-) (ssb) [Shewanella sp. MR-4]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGGRNQGQSQGQGQGAPMGGMQQNAGYQAAPAQTAPAQNQYAPAQQSYQ
APAQQPQSGYNQQPAQQSYGQQQAQPHAQPQQGGYAPKPAAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 711 bp        

>NTDB_id=26279 SHEWMR4_RS17855 WP_011624150.1 4087443..4088153(-) (ssb) [Shewanella sp. MR-4]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTACGTTACATGCCAAACGG
TAACGCAGTCGCTAACATCACAGTAGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTTGGCAAGTTGGCTGAAATTACGGGTGAGTACCTGCGTAAAGGTTCACAGGTTTACCTCGAA
GGTAAACTGCAGACGCGTAAGTGGAAAGATCAAAGCGGTCAAGATCGTTACAGCACTGAAGTGGTTATCGACCAAAGCGG
TAGCATGCAAATGTTAGGTGGTCGCAATCAAGGCCAAAGTCAAGGTCAAGGCCAAGGTGCACCTATGGGTGGCATGCAAC
AAAACGCGGGTTACCAAGCGGCACCGGCTCAAACTGCGCCAGCGCAAAACCAATACGCGCCAGCACAGCAAAGTTACCAA
GCACCCGCACAGCAGCCACAATCTGGCTACAATCAGCAGCCAGCTCAGCAAAGCTATGGCCAGCAACAAGCGCAGCCCCA
CGCACAGCCACAGCAAGGTGGTTATGCGCCTAAGCCTGCTGCACCTGCGTATCAAGCACCAGCGGCACCTGCACAACGTC
CAGCGCCACAGCCACAACAAAACTTCACCCCAGATTTGGATGATGGTTGGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.974

82.627

0.487
  ssb Glaesserella parasuis strain SC1401

44.635

98.729

0.441
  ssb Neisseria gonorrhoeae MS11

40.851

99.576

0.407
  ssb Neisseria meningitidis MC58

40.773

98.729

0.403

Multiple sequence alignment