Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C0J56_RS26810 Genome accession   NZ_CP025542
Coordinates   5935633..5936151 (-) Length   172 a.a.
NCBI ID   WP_092444796.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain 2P24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5930633..5941151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS26790 (C0J56_26780) - 5930760..5931560 (-) 801 WP_245150876.1 efflux RND transporter periplasmic adaptor subunit -
  C0J56_RS30965 - 5931639..5931901 (-) 263 Protein_5121 efflux transporter periplasmic adaptor subunit -
  C0J56_RS26795 (C0J56_26785) - 5932251..5934563 (+) 2313 WP_134926041.1 TonB-dependent siderophore receptor -
  C0J56_RS26800 (C0J56_26790) - 5934679..5935092 (+) 414 WP_245150877.1 hypothetical protein -
  C0J56_RS26805 (C0J56_26795) - 5935079..5935480 (+) 402 WP_134926043.1 hypothetical protein -
  C0J56_RS26810 (C0J56_26800) ssb 5935633..5936151 (-) 519 WP_092444796.1 single-stranded DNA-binding protein Machinery gene
  C0J56_RS26815 (C0J56_26805) - 5936161..5937558 (-) 1398 WP_134926044.1 MFS transporter -
  C0J56_RS26820 (C0J56_26810) uvrA 5937738..5940572 (+) 2835 WP_134926045.1 excinuclease ABC subunit UvrA -
  C0J56_RS26825 (C0J56_26815) bfr 5940667..5941131 (-) 465 WP_134926046.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19241.40 Da        Isoelectric Point: 5.9455

>NTDB_id=262468 C0J56_RS26810 WP_092444796.1 5935633..5936151(-) (ssb) [Pseudomonas fluorescens strain 2P24]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPRQQAPRPQQSAPQPQRERPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=262468 C0J56_RS26810 WP_092444796.1 5935633..5936151(-) (ssb) [Pseudomonas fluorescens strain 2P24]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCCAACGGCAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGTGGCCGTCCACAGGGCGACCAGCAACAAGGTGGCAACAACTACCAGCAGTCGGCTCCGCGTCAGC
AGGCGCCTCGTCCACAGCAGTCGGCTCCACAGCCACAACGCGAACGCCCGGCCCCACAACAGGCCGCGCCGCAACCGGCT
CCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.61
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.517
  ssb Neisseria meningitidis MC58

46.927

100

0.488
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.488

Multiple sequence alignment