Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | C0J56_RS25405 | Genome accession | NZ_CP025542 |
| Coordinates | 5640537..5641406 (+) | Length | 289 a.a. |
| NCBI ID | WP_116833472.1 | Uniprot ID | - |
| Organism | Pseudomonas fluorescens strain 2P24 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5635537..5646406
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0J56_RS25375 (C0J56_25360) | - | 5635715..5636011 (+) | 297 | WP_134925860.1 | DUF2845 domain-containing protein | - |
| C0J56_RS25385 (C0J56_25370) | - | 5636338..5636691 (-) | 354 | WP_134925862.1 | BON domain-containing protein | - |
| C0J56_RS25390 (C0J56_25375) | - | 5636972..5637391 (-) | 420 | WP_134925863.1 | pilin | - |
| C0J56_RS25395 (C0J56_25380) | pilB | 5637615..5639315 (+) | 1701 | WP_134925864.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| C0J56_RS25400 (C0J56_25385) | pilC | 5639318..5640535 (+) | 1218 | WP_109756361.1 | type II secretion system F family protein | Machinery gene |
| C0J56_RS25405 (C0J56_25390) | pilD | 5640537..5641406 (+) | 870 | WP_116833472.1 | A24 family peptidase | Machinery gene |
| C0J56_RS25410 (C0J56_25395) | coaE | 5641406..5642029 (+) | 624 | WP_134925865.1 | dephospho-CoA kinase | - |
| C0J56_RS25415 (C0J56_25400) | yacG | 5642026..5642232 (+) | 207 | WP_109756364.1 | DNA gyrase inhibitor YacG | - |
| C0J56_RS25420 (C0J56_25405) | - | 5642229..5642444 (-) | 216 | WP_013694234.1 | hypothetical protein | - |
| C0J56_RS25425 (C0J56_25410) | - | 5642508..5643194 (-) | 687 | WP_134925866.1 | energy-coupling factor ABC transporter permease | - |
| C0J56_RS25430 (C0J56_25415) | - | 5643340..5643966 (+) | 627 | WP_003205682.1 | DUF1780 domain-containing protein | - |
| C0J56_RS25435 (C0J56_25420) | - | 5643963..5644490 (+) | 528 | WP_134925867.1 | MOSC domain-containing protein | - |
| C0J56_RS25440 (C0J56_25425) | - | 5644543..5644716 (+) | 174 | WP_003185543.1 | DUF3094 domain-containing protein | - |
| C0J56_RS25445 (C0J56_25430) | - | 5644777..5646075 (+) | 1299 | WP_109756367.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31911.06 Da Isoelectric Point: 7.7097
>NTDB_id=262464 C0J56_RS25405 WP_116833472.1 5640537..5641406(+) (pilD) [Pseudomonas fluorescens strain 2P24]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLDREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLDREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=262464 C0J56_RS25405 WP_116833472.1 5640537..5641406(+) (pilD) [Pseudomonas fluorescens strain 2P24]
ATGCCCCTGAGCGAATTCTTCGTGCTGTACCCCCTGGCTTTCGTGCTCGTTGCGGCACTGCTCGGTCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCGACCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAATGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGCGCGGCCGCTGTTCAAGCTGCGCCGCGCCCATCGGCAGGCG
TTATCCCCTGACCGAACTGGCCTGCGGCGCGTTGTCGGCGTTCGTCGCCTGGCACTTCGGCTTCGGCTGGCAGGCGGCGA
TGGTGATGGTGTTGAGCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAACATCAATTGCTGCCCGATACCCTGGTA
TTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTTTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGGGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGTTGTTATTGTCGTCGCTGGTGGGC
GCCGTTATCGGGGTCATCGTGCTGCGCCTGCGTGATGCCCCAGGGTCGACGCAGATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
ATGCCCCTGAGCGAATTCTTCGTGCTGTACCCCCTGGCTTTCGTGCTCGTTGCGGCACTGCTCGGTCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCGACCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAATGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGCGCGGCCGCTGTTCAAGCTGCGCCGCGCCCATCGGCAGGCG
TTATCCCCTGACCGAACTGGCCTGCGGCGCGTTGTCGGCGTTCGTCGCCTGGCACTTCGGCTTCGGCTGGCAGGCGGCGA
TGGTGATGGTGTTGAGCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAACATCAATTGCTGCCCGATACCCTGGTA
TTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTTTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGGGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGTTGTTATTGTCGTCGCTGGTGGGC
GCCGTTATCGGGGTCATCGTGCTGCGCCTGCGTGATGCCCCAGGGTCGACGCAGATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.817 |
98.27 |
0.519 |
| pilD | Vibrio campbellii strain DS40M4 |
50.526 |
98.616 |
0.498 |
| pilD | Acinetobacter baumannii D1279779 |
48.043 |
97.232 |
0.467 |
| pilD | Acinetobacter nosocomialis M2 |
48.043 |
97.232 |
0.467 |
| pilD | Neisseria gonorrhoeae MS11 |
47.038 |
99.308 |
0.467 |