Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | CU052_RS07525 | Genome accession | NZ_CP025537 |
| Coordinates | 1570831..1571424 (+) | Length | 197 a.a. |
| NCBI ID | WP_005451500.1 | Uniprot ID | A0A9X3S2A2 |
| Organism | Vibrio harveyi strain 345 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1565831..1576424
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CU052_RS07510 (CU052_07910) | - | 1566514..1569084 (-) | 2571 | WP_050902270.1 | penicillin-binding protein 1A | - |
| CU052_RS07515 (CU052_07915) | pilM | 1569263..1570279 (+) | 1017 | WP_026138410.1 | type IV pilus assembly protein PilM | Machinery gene |
| CU052_RS07520 (CU052_07920) | pilN | 1570263..1570838 (+) | 576 | WP_005451499.1 | PilN domain-containing protein | Machinery gene |
| CU052_RS07525 (CU052_07925) | pilO | 1570831..1571424 (+) | 594 | WP_005451500.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| CU052_RS07530 (CU052_07930) | pilP | 1571414..1571929 (+) | 516 | WP_005451501.1 | pilus assembly protein PilP | Machinery gene |
| CU052_RS07535 (CU052_07935) | pilQ | 1571964..1573715 (+) | 1752 | WP_005451505.1 | type IV pilus secretin PilQ | Machinery gene |
| CU052_RS07540 (CU052_07940) | aroK | 1573905..1574423 (+) | 519 | WP_005451507.1 | shikimate kinase AroK | - |
| CU052_RS07545 (CU052_07945) | aroB | 1574455..1575555 (+) | 1101 | WP_038898114.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23020.58 Da Isoelectric Point: 4.8068
>NTDB_id=262395 CU052_RS07525 WP_005451500.1 1570831..1571424(+) (pilO) [Vibrio harveyi strain 345]
MVNWQDLEMDEIAEWPLVPQIVVILLLVVLIQGLGYWFYLKPEQEQLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKQSEHFLYRLPLDIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEVKKDEK
MVNWQDLEMDEIAEWPLVPQIVVILLLVVLIQGLGYWFYLKPEQEQLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKQSEHFLYRLPLDIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEVKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=262395 CU052_RS07525 WP_005451500.1 1570831..1571424(+) (pilO) [Vibrio harveyi strain 345]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATCGCTGAGTGGCCATTAGTGCCTCAGATAGTAGTGATCTTGTTGTT
AGTTGTGCTGATTCAAGGCCTTGGTTATTGGTTTTATTTAAAGCCAGAGCAAGAACAGCTGAATAACCTTATTCAAGAAG
AACAAACCTTAAAAGTTGCGTTACGGATCAAAGCGAATAAAGTCGCTGCTTTGCCTCAATTGCAATCGCAACTTGATGAG
CTTACTACTCGATACGAATTGCTACTGCAACAACTGCCTGCACAGAAAGAGCTGGCAACCATGTTGGCTTCGGTGAATGA
ACTCGGAATTGATAATAAGTTGACGTTCACCCGAATCGACTGGGGTGATAAGCAATCAGAACACTTCCTTTATCGTTTAC
CGCTCGACATTGAGTTGACAGGGGATTTTCATGATATCGGTCGTTTCTCCCAAGCGATTGCGACGTTGCCACGCATCATC
ACTTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTCTGCACTTTCGTGTGAAAGCAAACACTTACCA
GTTCAAACCAGAGGTGAAGAAAGATGAGAAGTAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATCGCTGAGTGGCCATTAGTGCCTCAGATAGTAGTGATCTTGTTGTT
AGTTGTGCTGATTCAAGGCCTTGGTTATTGGTTTTATTTAAAGCCAGAGCAAGAACAGCTGAATAACCTTATTCAAGAAG
AACAAACCTTAAAAGTTGCGTTACGGATCAAAGCGAATAAAGTCGCTGCTTTGCCTCAATTGCAATCGCAACTTGATGAG
CTTACTACTCGATACGAATTGCTACTGCAACAACTGCCTGCACAGAAAGAGCTGGCAACCATGTTGGCTTCGGTGAATGA
ACTCGGAATTGATAATAAGTTGACGTTCACCCGAATCGACTGGGGTGATAAGCAATCAGAACACTTCCTTTATCGTTTAC
CGCTCGACATTGAGTTGACAGGGGATTTTCATGATATCGGTCGTTTCTCCCAAGCGATTGCGACGTTGCCACGCATCATC
ACTTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTCTGCACTTTCGTGTGAAAGCAAACACTTACCA
GTTCAAACCAGAGGTGAAGAAAGATGAGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
93.158 |
96.447 |
0.898 |
| pilO | Vibrio cholerae strain A1552 |
71.066 |
100 |
0.711 |